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Table 1 Summary of the RNA-Seq data of both Anisakis simplex (s.s.) and Anisakis pegreffii whole third-stage larvae (WL) and oesophageal-pharyngeal region (PX). For A. pegreffii, assembly and results of bioinformatic analyses and annotation are reported. For both A. simplex and A. pegreffii, upregulated differentially expressed genes (DEGs) are also reported

From: Tissue-specific transcriptomes of Anisakis simplex (sensu stricto) and Anisakis pegreffii reveal potential molecular mechanisms involved in pathogenicity

 

WL

PX

Anisakis simplex (s.s.)

 Number of reads

32,859,191

37,606,372

 Number of reads mapping against genome

29,557,642

34,029,700

 Number of uniquely mapping

28,085,077

32,380,240

 Number of Mbp

1369

1567

 DEGs

109

226

Anisakis pegreffii

 Number of reads

23,397,005

36,382,470

 Number of Mbp

975

1515

De-novo assembly

 Number of transcripts

21,195a

 Mean length

468

 N50

2063

Annotation

 Number of ORFs

10,424

 Number of transcripts matching available sequences in Nr

7920

 Returning SwissProt

8803

 Gene Ontology

8560

 Kyoto Encyclopoedia of Genes and Genomes

7369

 DEGs

163

339

  1. aTranscripts obtained from pooled reads