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Table 3 Protein families (according to information in the Pfam database) identified amongst the upregulated transcripts in the pharynx (PX) of Anisakis simplex (s.s.) and Anisakis pegreffii. Pfam code and description, relative abundance of transcripts compared to the whole transcriptome (expressed as ratio between relative frequencies) and medial logFC are reported

From: Tissue-specific transcriptomes of Anisakis simplex (sensu stricto) and Anisakis pegreffii reveal potential molecular mechanisms involved in pathogenicity

PFAM

PFAM description

PX enrichment

Median logFC

Anisakis simplex (s.s.)

 PF00188

Cysterin-rich secretory protein

9.71

2.17

 PF01400

Astacin peptidase M12A

16.19

2.15

 PF01431

Peptidase M13

11.88

2.48

 PF01433

Peptidase M1

2.48

2.68

 PF11838

Peptidase active site

17.81

2.68

 PF00450a

Peptidase S10

3.23

2.42

 PF01549

ShK toxin

13.36

2.23

 PF00014a

Kunitz/Bovine pancreatic trypsin inhibitor domain

4.97

2.65

 PF01683

EB module

18.59

2.55

 PF00031

Cystatin

13.36

2.06

Anisakis pegreffii

 PF00188

Cysterin-rich secretory protein

9.29

3.41

 PF01400

Astacin peptidase M12A

12.62

3.28

 PF01431

Peptidase M13

13.59

3.02

 PF01433

Peptidase M1

5.52

3.66

 PF01549

ShK toxin

8.83

2.75

 PF01683

EB module

58.88

2.98

 PF00063

Myosin head motor domain

11.39

2.71

 PF00031

Cystatin domain (cysteine protease inhibitor)

8.83

2.81

 PF06394

Pepsine inhibitor like

8.03

3.14

 PF14580

Leucine-rich

88.31

4.93

  1. aPfam associated to transcripts detected in AS-PX only