Locus | Assemblage | Sub-assemblage | Isolates | Reference sequence | Stretch | Single nucleotide polymorphisms | GenBank ID |
---|---|---|---|---|---|---|---|
gdh | A | AI | 1 | L40509 | 75–484 | None | MF581531 |
 |  | 1 | L40509 | 75–484 | T126Y | MF581532 | |
 |  | 1 | L40509 | 75–484 | T132A, C220Aa | MF581533 | |
 |  | 1 | L40509 | 75–484 | G191Ab, T278Cc | MF581534 | |
 |  | AII | 5 | L40510 | 78–482 | None | MF581535 |
 |  | 1 | L40510 | 78–482 | T214Y | MF581536 | |
 |  | BIII | 1 | AF069059 | 40–460 | C87T, T147C, G150A, C330T | MF581537 |
 |  | 1 | AF069059 | 54–423 | C99T, T147C, G150A, T276C, C309T, C336T, A412Cd | MF581538 | |
 |  | BIV | 2 | L40508 | 64–442 | None | MF581539 |
 |  | 1 | L40508 | 77–482 | G156R, T183Y, C273Y, T387Y, G408R, A438R | MF581540 | |
 |  | 1 | L40508 | 77–496 | T183Y, G186R, C255T, C273T, T312Y, T387C, C423Y, A438R | MF581541 | |
 |  | 1 | L40508 | 78–482 | T183C, T366C, T387C, A438G | MF581542 | |
 |  | 1 | L40508 | 77–496 | T183C, T387C, C423T, A438G | MF581543 | |
 |  | 1 | L40508 | 78–482 | T183Y, T366Y, T387C, C432Y | MF581544 | |
 |  | BIII/BIV | 1 | L40508 | 77–482 | A122Y, T135C, T183Y, G186R, C255Y, C273Y, T366Y, T387Y, G408R, C411Y, A438R, A441R | MF581545 |
 |  | 1 | L40508 | 76–496 | T135Y, T183Y, G186R, C216Y, T222Y, C255Y, C273Y, T324Y, C345Y, T366Y, T387C, A438R, T462Y, T492Y | MF581546 | |
 |  | 1 | L40508 | 76–491 | T135Y, T183Y, G186R, C255Y, C273Y, T312Y, C345Y, T366Y, C372Y, T387Y, C423Y, A438R | MF581547 | |
 |  | 1 | L40508 | 78–482 | T183C, G186R, C255Y, C264Y, C273Y, T312Y, C345Y, T366Y, C372Y, G378R, T387Y, A438R | MF581548 | |
bg | A | AIII | 2 | AY072724 | 102–590 | None | MF581549 |
 |  | B | 1 | AY072727 | 97–587 | C114G, C117G, T240C, C309T | MF581550 |
 |  | 1 | AY072727 | 102–593 | C152T, C279T, C326T | MF581551 | |
 |  | 1 | AY072727 | 131–550 | C165T, C168T | MF581552 | |
 |  | 1 | AY072727 | 103–590 | A183G, A228G, C309T | MF581553 | |
 |  | 1 | AY072727 | 102–593 | A183R, C309Y, C450Y | MF581554 | |
 |  | 1 | AY072727 | 103–589 | A212G, C279T, A346W, A412R, A550R | MF581555 | |
 |  | 1 | AY072727 | 104–588 | C279T | MF581556 | |
 |  | 1 | AY072727 | 102–601 | C279T, A343G | MF581557 | |
 |  | 1 | AY072727 | 103–594 | C309Y | MF581558 | |
 |  | 1 | AY072727 | 98–590 | Poor quality sequence | – |