Table 3 Variation within sequences of internal transcribed spacers of Pharyngostrongylus kappa and Pharyngostrongylus patriciae from different hosts
Host | Voucher no. | ITS1 | ITS2 | ||||||
|---|---|---|---|---|---|---|---|---|---|
GenBank ID | Length (bp) | G+C content (%) | Pairwise difference (%) | GenBank ID | Length (bp) | G+C content (%) | Pairwise difference (%) | ||
Pharyngostrongylus kappa | |||||||||
 M. giganteus | 1X8.1 | MG972109 | 379 | 43.80 | 0.3–4.5 | MG972110a | 222 | 40.99 | 0.5–8.5 |
1X8.2 | MG972111a | 379 | 45.90 | MG972112 | 222 | 41.40 | |||
1X8.7 | MG972113b | 379 | 45.60 | na | na | na | |||
1X8.8 | na | na | na | MG972114 | 222 | 40.54 | |||
7W1 | na | na | na | MG972115b | 219 | 42.00 | |||
7W2 | MG972116 | 379 | 45.65 | MG972117 | 223 | 40.36 | |||
P3A1 | MG972118 | 380 | 45.79 | MG972119b | 219 | 42.00 | |||
P3A2 | MG972120 | 379 | 46.17 | na | na | na | |||
P3A3 | MG972121a | 379 | 45.90 | MG972122c | 219 | 41.55 | |||
P5A1 | MG972123 | 379 | 45.65 | na | na | na | |||
P7A2 | na | na | na | MG972124 | 219 | 41.10 | |||
V3.1 | na | na | na | MG972125 | 219 | 41.64 | |||
V3.2 | MG972126c | 379 | 45.91 | MG972127c | 219 | 41.55 | |||
V3.5 | MG972128 | 379 | 45.65 | na | na | na | |||
V3.6 | MG972129d | 379 | 46.17 | na | na | na | |||
XV3.1 | MG972130d | 379 | 46.17 | MG972131c | 219 | 41.55 | |||
XV3.2 | MG972132b | 379 | 45.60 | MG972133 | 222 | 40.99 | |||
XV3.4 | MG972134 | 379 | 45.91 | MG972135 | 219 | 41.10 | |||
XD1.4 | MG972136a | 379 | 45.90 | MG972137 | 219 | 41.55 | |||
XD1.5 | MG972138 | 379 | 45.38 | MG972139 | 222 | 41.44 | |||
XD1.6 | MG972140c | 379 | 45.91 | MG972141c | 219 | 41.55 | |||
XD1.7 | na | na | na | MG972142 | 219 | 41.10 | |||
WW3.5 | na | na | na | MG927143d | 222 | 41.00 | |||
WW3.6 | MG972144b | 379 | 45.60 | na | na | na | |||
XDR10.1 | MG972145c | 379 | 45.91 | MG972146 | 219 | 41.10 | |||
XDR10.2 | MG972147b | 379 | 45.60 | MG972148 | 222 | 41.44 | |||
XDR10.3 | MG972149 | 379 | 45.38 | MG972150d | 222 | 41.00 | |||
XDR10.5 | MG972151 | 379 | 46.44 | na | na | na | |||
XDR10.6 | MG972152 | 379 | 45.65 | MG972153c | 219 | 41.55 | |||
XDR10.9 | na | na | na | MG972154 | 219 | 42.00 | |||
Pharyngostrongylus patriciae n. sp. | |||||||||
 O. antilopinus | 27C3.2 | MG972155e | 378 | 45.50 | 0.6 | na | na | na | na |
28A1 | MG972156 | 378 | 45.50 | MG972157e | 222 | 42.34 | |||
38T.31 | na | na | na | MG972158e | 222 | 42.34 | |||
 O. robustus | 21J3.1 | MG972159 | 378 | 45.24 | 0.3–3.2 | MG972160 | 222 | 42.34 | 1.0–5.0 |
21J3.2 | MG972161 | 378 | 44.71 | MG972162 | 222 | 41.44 | |||
21J3.5 | MG972163 | 378 | 45.77 | MG972164 | 222 | 40.99 | |||
21J3.6 | na | na | na | MG972165 | 222 | 40.99 | |||
21J3.13 | na | na | na | MG972166 | 222 | 42.34 | |||
21J3.14 | MG972167 | 378 | 45.77 | MG972168a | 222 | 40.99 | |||
26Z1.10 | MG972169f | 378 | 44.97 | na | na | N/A | |||
27G9.6 | MG972170 | 378 | 44.97 | MG972171 | 222 | 41.89 | |||
27G9.7 | MG972172 | 378 | 45.24 | MG972173e | 222 | 42.34 | |||
27G9.8 | MG972174 | 377 | 44.83 | MG972175 | 222 | 40.54 | |||
27G9.11 | MG972176e | 378 | 45.50 | na | na | 42.30 | |||
38V15 | MG972177f | 378 | 44.97 | MG972178 | 222 | 42.34 | |||
38V18 | MG972179e | 378 | 45.50 | MG972180e | 222 | 42.34 | |||
 O. bernardus | 28C2 | na | na | na | 0.3–2.7 | MG972181 | 222 | 41.44 | 0.5–2.3 |
28C3 | MG972182 | 378 | 44.44 | MG972183 | 222 | 41.44 | |||
28C4 | na | na | na | MG972184 | 222 | 41.89 | |||
28C17 | MG972185 | 379 | 45.91 | na | na | na | |||
28C20 | MG972186 | 379 | 45.91 | na | na | na | |||
28C21 | MG972187f | 378 | 44.97 | na | na | na | |||