Table 1 Filter of Hyalomma dromedarii RNA-Seq raw data results
| Â | Female | Male | ||
|---|---|---|---|---|
No. of reads | % of reads | No. of reads | % of reads | |
Total reads (raw data) | 133,633,885 | – | 196,651,764 | – |
Total good reads (approved) | 13,037,8067 | 97.56 | 191,575,365 | 97.42 |
Total filtered reads (removed) | 3,255,818 | 2.44 | 5,076,399 | 2.58 |
Too short after clip | 2,723,639 | 2.04 | 4,198,316 | 2.13 |
Filtered on quality | 488,212 | 0,37 | 796,059 | 0.4 |
Filtered on homopolymer | 39,730 | 0.03 | 75,314 | 0.04 |
Filtered on low complexity | 4,237 | 0 | 6,710 | 0 |
Trimmed reads (not totally removed) | 22,868,516 | 17.11 | 32,950,850 | 16.76 |