Table 5 Rhipicephalus appendiculatus cox1 haplotypes and their distribution among agro-ecological zones of the Great lakes region and other sub-Saharan African countries

CH1^a

Kenya (H2: KU725891, H4: KU725893, H6: KU725895)^e, Rwanda (H3:DQ901360)^f Zambia-east (H4: KX276942^e, H5: DQ859266^g, H3:DQ901361^f, H2: DQ859265^g)

Burundi (AEZ1, AEZ3), DRC (AEZ1, AEZ2, AEZ3), Tanzania (TZ18, TZ10, TZ08, TZ20), Rwanda (AEZ2)

A

CH3

–

Burundi AEZ1

A

CH4

Rwanda (H6: DQ901362)^f

Burundi AEZ1, Rwanda (AEZ2)

A

CH6^b

Kenya (H5: KU725894)^e

Burundi (AEZ1, AEZ3), DRC (AEZ1, AEZ2)

A

CH7^c

Kenya (H1: KU725890)^e, South Africa (H1: KX276939^e, H1: KX276940^e, H1: DQ901356^f), Zambia-east (H1: DQ859261)^g, Zambia-south (H1:KX276943^e, H1: DQ859262)^g, Zimbabwe (AF132833^h, KC503257ⁱ, H1: KX276944^e), Grande Comore (H1)^j

Burundi AEZ1, DRC (AEZ1, AEZ2, AEZ3), Rwanda (AEZ2)

B

CH9

–

Burundi AEZ3

A

CH10

–

Burundi AEZ1

A

CH11^d

Kenya (H3: KU725892)^e, Rwanda (H3: DQ901363)^f, Grande Comore (H3)^j

DRC (AEZ1, AEZ2, AEZ3), Rwanda (AEZ2)

A

CH12

Kenya (H11: KU725900)^e

DRC (AEZ2, AEZ3)

A

CH14

–

DRC AEZ3

A

CH16

–

DRC AEZ1

A

CH18

–

DRC AEZ2

A

CH20

–

DRC AEZ2

B

CH23

Uganda (H8: KX276941, KU725897)^e

–

B

CH24

Kenya (H14: KU725903)^e

–

B

CH25

Kenya (H27: KU725916)^e

–

B

CH26

Grande Comore (H2: DQ901357)^f,j, Kenya (H7: KU725896, H13: KU725902)^e

–

B

CH27

Kenya (H16: KU725905)^e

–

B

CH28

Kenya (H21: KU725910^e, H9: DQ901359^f, H9: DQ901358^f)

–

B

CH29

Kenya (H28: KU725917)^e

–

B

CH30

Kenya (H9: KU725898)^e

–

A

CH31

Kenya (H17: KU725906^e

–

A

CH32

Kenya (H24: KU725913)^e

–

A

CH33

–

Tanzania (TZ13)

A

CH34

Kenya (H22: KU725911)^e

–

A

CH35

Kenya (H23: KU725912)^e

–

A

CH36

Kenya (H10: KU725899)^e

–

A

CH37

Kenya (H15:KU725904)^e

–

A

CH38

Kenya (H20: KU725909)^e

–

A

CH39

Kenya (H19: KU725908)^e

–

A

CH40

Kenya (H26: KU725915)^e

–

A

CH41

Kenya (H25: KU725914^e

–

A

CH42

Kenya (H18: KU725907)^e

–

A

CH43

Kenya (H12: KU725901)^e

–

A

CH44

Zambia-east (H3: DQ859263)^g

–

A

CH45

Zambia-east (H4: DQ859264)^g

–

A