Skip to main content

Advertisement

Table 3 Summary of annotation statistics for the final set of contigs. For each class of contig length the following data are given: number of contigs, number of contigs with a significant hit on Swissprot or Uniref90, number of peptides predicted by TransDecoder and number of contigs for which gene ontology terms could be extracted

From: Whole body transcriptomes and new insights into the biology of the tick Ixodes ricinus

Class No. of contigs No. of annotated (%)a No of peptides (%)b TGOc
301-500 100,081 19,017 (19.00) 16,289 (16.28) 5247 (5.24)
501-1000 49,324 16,604 (33.66) 16,295 (33.04) 6753 (13.69)
1001-1500 13,214 7658 (57.95) 8406 (63.61) 4442 (33.62)
1501-2000 6446 4641 (72.00) 5368 (83.28) 3185 (49.41)
2001-2500 3712 3033 (81.71) 3555 (95.77) 2271 (61.18)
2501-3000 2289 1930 (84.32) 2387 (104.28) 1500 (65.53)
3001-4000 2394 2182 (91.14) 2737 (114.33) 1779 (74.31)
4001,5000 1025 956 (93.27) 1179 (115.02) 814 (79.41)
5001-7500 716 676 (94.41) 882 (123.18) 602 (84.08)
7501-10000 96 93 (96.88) 132 (137.50) 91 (94.79)
10001-100000 19 19 (100.00) 27 (142.11) 18 (94.74)
Total 179,316 56,809 (31.68) 57,257 (31.93) 26,702 (14.89)
  1. aNumber of contigs with a significant hit on Swissprot or Uniref90
  2. bNumber of peptides predicted by TransDecoder
  3. cNumber of contigs for which gene ontology terms could be extracted