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Table 1 An alignment comparison of the genome-based and de novo assembly strategies for the T. gondii transcriptome

From: Comparative studies of Toxoplasma gondii transcriptomes: insights into stage conversion based on gene expression profiling and alternative splicing

Query

Strategy

Transcripts

AVG length (bp)

Reference genes detected

Shared

Unique

Bradyzoite

Genome-based

11,725

3411.79

6598

399

De novo

32,769

680.71

812

Tachyzoite

Genome-based

12,393

3716.96

5603

506

De novo

38,849

717.33

1514