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Table 1 An alignment comparison of the genome-based and de novo assembly strategies for the T. gondii transcriptome

From: Comparative studies of Toxoplasma gondii transcriptomes: insights into stage conversion based on gene expression profiling and alternative splicing

Query Strategy Transcripts AVG length (bp) Reference genes detected
Shared Unique
Bradyzoite Genome-based 11,725 3411.79 6598 399
De novo 32,769 680.71 812
Tachyzoite Genome-based 12,393 3716.96 5603 506
De novo 38,849 717.33 1514