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Table 1 Primer and probe sequences for the 10 kinds of pathogen

From: Establishment and optimization of a liquid bead array for the simultaneous detection of ten insect-borne pathogens

Pathogen

Primer or probe sequence

Amplified fragment length (bp)

GenBank ID

ASFV

Forward primer: 5'-AGTTATGGGAAACCCGACCC-3'

254

FN557520

Reverse primer: Biotin-5'-CCCTGAATCGGAGCATCCT-3'

Capture probe: NH2-C12-5'-AGCCTTATGTTCCAGTAGGGTTTG-3'

RC-probe: Biotin-5'-CAAACCCTACTGGAACATAAGGCT-3'

BTV

Forward primer: 5'-GCAGCATTTTGAGAGAGCGA-3'

101

KP 822059.1

Reverse primer: Biotin-5'-CCCGATCATACATTGCTTCCT-3'

Capture probe: NH2-C12-5'-GGAGGAGCCGGCGAAAGCATA-3'

RC-probe: Biotin-5'-TATGCTTTCGCCGGCTCCTCC-3'

BB

Forward primer: 5'-AAGAGCAGACGGAACCAGAC-3'

345

AY502600

Reverse primer: Biotin-5'-GTGCCATTTGAGTCGTATTG-3'

Capture probe: NH2-C12-5'-AATTCAGGCACTTCAACTTTAACAA-3'

RC-probe: Biotin-5'-TTGTTAAAGTTGAAGTGCCTGAATT-3'

EHDV

Forward primer: 5'-TGATTATGATGTTCATGGCGAA-3'

189

KU140939.1

Reverse primer: Biotin-5'-ACCTTGGAGCTTCACTCTATCT-3'

Capture probe: NH2-C12-5'-TAGATGGATTTGACATACCGCCGGA-3'

RC-probe: Biotin-5'-TCCGGCGGTATGTCAAATCCATCTA-3'

VSV

Forward primer: 5'-TGGACGGGCTTGAAAATCAGTGCAAA-3'

199

KP 202364.1

Reverse primer: Biotin-5'-TTGAATCTGGAAACAATAGTTCCGTATCT-3'

Capture probe: NH2-C12-5'-ATGTTCTTCCACATGTTCAAAAA-3'

RC-probe: Biotin-5'-TTTTTGAACATGTGGAAGAACAT-3'

WNV

Forward primer: 5'-GAGCCACTCAGGCAGGGAGATTCAG-3'

496

KY229074.1

Reverse primer: Biotin-5'-AACACCACAGTGCCGTGACCT-3'

Capture probe: NH2-C12-5'-TGAAGGGAACAACCTATGGCGTCTG-3'

RC-probe: Biotin-5'-CAGACGCCATAGGTTGTTCCCTTCA-3'

CB

Forward primer: 5'-TGAGATTCGGGGGTTGTTGC-3'

376

M80806

Reverse primer: Biotin-5'-ACACCTCCTTATTCCCACTCG-3'

Capture probe: NH2-C12-5'-TTTAACGGCGCTCTCGGTTTATGCG-3'

RC-probe: Biotin-5'-CGCATAAACCGAGAGCGCCGTTAAA-3'

RVFV

Forward primer: 5'-ATGATGACATTAGAAGGGA-3'

298

DQ380149

Reverse primer: Biotin-5'-ATGCTGGGAAGTGATGAG-3'

Capture probe: NH2-C12-5'-ATGCTGTAGTTCCAAACTCAGCCCT-3'

RC-probe: Biotin-5'-AGGGCTGAGTTTGGAACTACAGCAT-3'

EBV

Forward primer: 5'-CGCTGGCTGGTGTTAATGTAGGG-3'

249

KC545392.1

Reverse primer: Biotin-5'-ATGCAGTCGTGATGGCTTCGG-3'

Capture probe: NH2-C12-5'-CAGCAAACTAACGCAATGGTAACCT-3'

RC-probe: Biotin-5'-AGGTTACCATTGCGTTAGTTTGCTG-3'

SBV

Forward primer: 5'-GAAGCTAGTGCTCAGATTGTCATGC-3'

130

KC545392.1

Reverse primer: Biotin-5'-GTGGATAGAAGTCAAAAGCATCAAGG-3'

Capture probe: NH2-C12-5'-AAGGGATGCACCTGGGCCGATGGTTA-3'

RC-probe: Biotin-5'-TAACCATCGGCCCAGGTGCATCCCTT-3'

  1. Abbreviations: ASFV African swine fever virus, BTV bluetongue virus, BB Borrelia burgdorferi, EHDV epizootic hemorrhagic disease virus, VSV vesicular stomatitis virus, WNV West Nile virus, CB Coxiella burnetii, RVFV Rift Valley fever virus, EBV Ebola virus, SBV Schmallenberg virus