Locus | Assemblage | Sub-assemblage | No. of isolates | Reference sequence | Stretch | Single nucleotide polymorphisms | GenBank ID |
---|---|---|---|---|---|---|---|
gdh | A | AII | 17 | L40510 | 78–481 | None | MG807884 |
AII | 1 | L40510 | 78–481 | C310Y | MG807885 | ||
B | BIII | 1 | AF069059 | 40–460 | C171Y, T456Y | MG807886 | |
1 | AF069059 | 43–460 | C309T, T456Y | MG807887 | |||
BIV | 2 | L40508 | 76–447 | None | MG807888 | ||
1 | L40508 | 76–496 | G84R, G156R, T183Y, G294R, C345Y, T387Y, C432Y, G453R | MG807889 | |||
1 | L40508 | 76–491 | G93A, C123T, T135C, C273T | MG807890 | |||
4 | L40508 | 80–476 | G180A | MG807891 | |||
1 | L40508 | 76–447 | T183C, T387C, C432T | MG807892 | |||
BIII/BIV | 1 | L40508 | 80–485 | T135Y, T183Y, G186R, C255Y, C273Y, C345Y, T366Y, C372Y, T387C, C396Y, C423Y, A438R | – | ||
1 | L40508 | 80–485 | T183Y, C255Y, C273Y, T366Y, T387C, C396T, C423Y, A438R | – | |||
1 | L40508 | 80–480 | T135Y, T183Y, C255Y, C273Y, G334R, C345Y, T366Y, T387C, C396Y, A438R | – | |||
1 | L40508 | 78–482 | C123Y, T135Y, T183C, G186R, C255Y, C273Y, C345Y, T366Y, C372Y, T387C, A438R, T462Y | MG807893 | |||
1 | L40508 | 80–485 | T135Y, C192Y, C255Y, C258Y, C273Y, C345Y, T366Y, C372Y, T387Y, A438R, T462Y | – | |||
bg | A | AII | 6 | AY072723 | 102–590 | None | MG807893 |
1 | AY072723 | 102–589 | 224delA | MG807895 | |||
1 | AY072723 | 102–603 | G277R | MG807896 | |||
1 | AY072723 | 127–586 | T469Y | MG807897 | |||
AIII | 1 | AY072724 | 102–590 | G322Aa, A457Gb, A463Gc | MG807898 | ||
B | 1 | AY072727 | 105–590 | None | MG807899 | ||
1 | AY072727 | 103–590 | T209Y | MG807900 | |||
1 | AY072727 | 102–590 | C309T, T519Y, C564Y, C567Y | MG807901 |