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Table 2 Summary of all pathogen species, genotypes and/or assemblages identified in alpaca herds from 81 farms from six states in Australia (Fig. 1) based on PCR-based sequencing of particular genetic markers. The GenBank accession numbers of respective sequences are listed

From: First cross-sectional, molecular epidemiological survey of Cryptosporidium, Giardia and Enterocytozoon in alpaca (Vicugna pacos) in Australia

Pathogen identified Farm/herd/sample code Genetic marker used Pathogen species/genotype/assemblage identified by PCR-based sequencing GenBank accession no.
Cryptosporidium sp. CsNSW26 SSU Cryptosporidium ubiquitum MH341585
CsVIC15a SSU C. parvum MH341586
gp60 C. parvum IIaA20G3R1 MH346121
CsVIC25a SSU C. cuniculus MH341587
gp60 C. cuniculus VbA25 MH346122
Giardia duodenalis CsNSW7 tpi Giardia duodenalis AI MH346123
CsNSW9 tpi G. duodenalis AI MH346123
CsNSW11 tpi G. duodenalis E MH346124
CsNSW21 tpi G. duodenalis AI MH346123
CsSA3 tpi G. duodenalis AI MH346123
CsVIC27 tpi G. duodenalis AI MH346123
Enterocytozoon bieneusi CsNSW6 ITS Enterocytozoon bieneusi genotype ALP1 MH342036
CsNSW11 ITS E. bieneusi genotype ALP3 MH342037
CsNSW20a ITS E. bieneusi genotype P MH342038
CsVIC16 ITS E. bieneusi genotype ALP1 MH342036
CsVIC22 ITS E. bieneusi genotype ALP1 MH342036
CsVIC23 ITS E. bieneusi genotype P MH342038
CsSA3 ITS E. bieneusi genotype ALP1 MH342036
CsSA7 ITS E. bieneusi genotype ALP1 MH342036
  1. aReported from a cria of ≤ 6 months of age