Table 2 Summary of all pathogen species, genotypes and/or assemblages identified in alpaca herds from 81 farms from six states in Australia (Fig. 1) based on PCR-based sequencing of particular genetic markers. The GenBank accession numbers of respective sequences are listed
Pathogen identified | Farm/herd/sample code | Genetic marker used | Pathogen species/genotype/assemblage identified by PCR-based sequencing | GenBank accession no. |
|---|---|---|---|---|
Cryptosporidium sp. | CsNSW26 | SSU | Cryptosporidium ubiquitum | MH341585 |
CsVIC15a | SSU | C. parvum | MH341586 | |
gp60 | C. parvum IIaA20G3R1 | MH346121 | ||
CsVIC25a | SSU | C. cuniculus | MH341587 | |
gp60 | C. cuniculus VbA25 | MH346122 | ||
Giardia duodenalis | CsNSW7 | tpi | Giardia duodenalis AI | MH346123 |
CsNSW9 | tpi | G. duodenalis AI | MH346123 | |
CsNSW11 | tpi | G. duodenalis E | MH346124 | |
CsNSW21 | tpi | G. duodenalis AI | MH346123 | |
CsSA3 | tpi | G. duodenalis AI | MH346123 | |
CsVIC27 | tpi | G. duodenalis AI | MH346123 | |
Enterocytozoon bieneusi | CsNSW6 | ITS | Enterocytozoon bieneusi genotype ALP1 | MH342036 |
CsNSW11 | ITS | E. bieneusi genotype ALP3 | MH342037 | |
CsNSW20a | ITS | E. bieneusi genotype P | MH342038 | |
CsVIC16 | ITS | E. bieneusi genotype ALP1 | MH342036 | |
CsVIC22 | ITS | E. bieneusi genotype ALP1 | MH342036 | |
CsVIC23 | ITS | E. bieneusi genotype P | MH342038 | |
CsSA3 | ITS | E. bieneusi genotype ALP1 | MH342036 | |
CsSA7 | ITS | E. bieneusi genotype ALP1 | MH342036 |