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Table 3 Polymorphisms in malic enzyme (me) gene

From: Exploiting genetic polymorphisms in metabolic enzymes for rapid screening of Leishmania infantum genotypes

Zymodeme

Strain/isolate

GenBank ID

106

204

327

329

390

507

586

762

843

919

1182

1287

1620

MON-1

MHOM/FR/78/LEM75

DQ449701.1

G

C

C

T

T

T

C

C

C

G

A

C

G

MON-1

MHOM/ES/1993/PM1

DQ449703.1

.

.

.

.

.

.

.

.

.

.

.

.

.

MON-1

MHOM/FR/1995/LPN114

DQ449702.1

.

.

.

.

.

.

.

.

.

.

.

.

.

MON-1

MHOM/PT/2000/IMT260

DQ449706.1

.

.

.

.

.

.

.

.

.

.

.

.

.

MON-1

MHOM/FR/1997/LSL29

DQ449704.1

.

.

.

.

.

.

.

.

.

.

.

.

.

MON-1

MHOM/ES/1986/BCN16

DQ449705.1

.

.

.

.

.

.

.

.

.

.

.

.

.

MON-1

MHOM/BL/67/ITMAP263

KU175196.1

.

.

.

.

.

.

.

.

.

.

.

.

MON-1

MHOM/TN/80/IPT1

MF375413

.

.

.

G

.

.

.

.

MON-1

MHOM/FR/78/LEM75

MF375414

.

.

.

.

.

.

.

.

MON-1

Isolate 31U

MF375415

.

.

.

.

.

.

.

.

MON-1

Isolate 49u

MF375416

.

.

.

.

.

.

.

MON-1

Isolate 10816

MF375417

.

.

.

.

.

.

.

.

MON-1

Isolate 791

MF375418

.

.

.

.

.

.

.

.

MON-1

Isolate V2921

MF375419

.

.

MON-11

MHOM/FR/1980/LEM189

DQ449714.1

.

.

.

.

G

.

.

.

.

.

.

.

.

MON-24

MHOM/DZ/82/LIPA59

MF375420

T

.

G

G

G

.

.

T

MON-29

MHOM/ES/82/BCN1

MF375421

.

M

G

G

G

.

.

.

MON-29

MHOM/FR/1996/LEM3249

DQ449707.1

.

.

.

.

G

.

.

.

.

.

.

.

.

MON-72

MHOM/IT/86/ISS218

MF375422

.

.

.

.

.

.

.

.

.

.

.

MON-78

MHOM/MT/1985/BUCK

DQ449715.1

.

.

G

G

G

.

.

.

A

C

T

.

MON-81

MHOM/SD/1962/3Sa

DQ449718.1

.

.

G

G

G

A

G

.

A

.

.

.

MON-98

MHOM/GR/2001/GH6

DQ449728.1

.

.

.

.

G

.

.

.

.

.

.

.

.

MON-98

MCAN/GR/2001/GD8

DQ449729.1

.

.

.

.

G

.

.

.

.

.

.

.

.

MON-98

MHOM/GR/2003/GH15

DQ449730.1

.

.

.

.

G

.

.

.

.

.

.

.

.

MON-98

MHOM/GR/2003/GH16

DQ449731.1

.

.

.

.

G

.

.

.

.

.

.

.

.

MON-98

MHOM/GR/2003/GH18

DQ449732.1

.

.

.

.

G

.

.

.

.

.

.

.

.

MON-98

MHOM/GR/2003/GH20

DQ449733.1

.

.

.

.

G

.

.

.

.

.

.

.

.

MON-98

MHOM/GR/2004/GD17

DQ449734.1

.

.

.

.

G

.

.

.

.

.

.

.

.

MON-183

MHOM/ES/1991/LEM2298

DQ449708.1

.

.

.

.

G

.

.

.

.

.

.

.

.

MON-188

MHOM/IT/1993/ISS800

DQ449722.1

.

T

.

G

G

G

.

.

T

A

.

.

.

MON-198

MHOM/ES/1988/LLM175

DQ449719.1

.

.

.

.

G

.

.

.

.

.

.

.

.

MON-199

MHOM/ES/1992/LLM373

DQ449720.1

A

.

.

G

G

G

.

.

.

.

C

.

.

MON-201

MHOM/IT/93/ISS822

MF375423

.

.

.

.

.

.

.

.

.

.

.

.

MON-228

MHOM/IT/1994/ISS1036

DQ449721.1

.

.

.

.

G

.

.

.

.

.

.

.

S

MON-267

MHOM/SD/1997/LEM3472a

DQ449723.1

.

.

.

G

G

G

.

.

.

A

.

.

.

MON-309

ITOB/TR/2005/CUK2

EU545253.1

.

T

.

K

G

G

.

.

Y

A

.

.

.

MON-309

MHOM/TR/2005/CUK1

EU545252.1

.

T

.

G

G

G

.

.

T

A

.

.

.

ni

ITOB/TR/2007/CUK10

EU545254.1

.

T

.

K

G

G

.

.

Y

A

.

.

.

non-MON-1

MHOM/TR/2000/OG-VL

EU545255.1

.

.

.

.

G

.

.

.

.

.

.

.

.

ni

Isolate RRR-B

DQ449727.1

.

.

.

.

G

.

.

.

.

.

.

.

.

  1. Zymodeme sequences obtained in this study are in bold
  2. Abbreviation: ni not indicated
  3. Key: . consensus sequence, – sequence not available
  4. aInitially assigned to L. infantum and successively designated L. donovani [18]