Table 1 Haplotype characteristics and levels of intra- and interspecific diversity of reference DNA sequences
Taxon | n | n hap | Intraspecific | H | Interspecific |
|---|---|---|---|---|---|
C. austeni | 1 | 1 | – | – | 0.2 |
C. bolitinos | 13 | 9 | 0–0.006 (0.001) | 0.91 | 0.075–0.087 (0.077) |
C. brucei | 3 | 3 | 0.002–0.018 (0.007) | 1 | 0.134–0.145 (0.141) |
C. candolfii | 2 | 1 | 0 | 0 | 0.188 |
C. distinctipennis | 7 | 5 | 0–0.043 (0.012) | 0.904 | 0.124–0.132 (0.128) |
C. dubitatus | 3 | 2 | 0–0.002 (0.001) | 0.666 | 0.156–0.159 (0.157) |
C. enderleini | 21 | 20 | 0.002–0.05 (0.01) | 0.995 | 0.104–0.12 (0.109) |
C. engubandei | 2 | 1 | 0 | 0 | 0.148 |
C. grahamii | 3 | 3 | 0.022–0.031 (0.025) | 1 | 0.166–0.180 (0.171) |
C. gulbenkiani | 3 | 3 | 0.004–0.009 (0.006) | 1 | 0.161 |
C. imicola | 17 | 13 | 0–0.004 (0.002) | 0.963 | 0.101–0.114 (0.107) |
C. isioloensis | 2 | 2 | 0.002 | 1 | 0.163–0.166 (0.164) |
C. kanagai | 1 | 1 | – | – | 0.174 |
C. kibatiensis | 1 | 1 | – | – | 0.153 |
C. kingi | 7 | 6 | 0.004–0.009 (0.005) | 0.952 | 0.092–0.097 (0.094) |
C. kwagga | 2 | 1 | 0 | 0 | 0.099 |
C. leucostictus | 3 | 3 | 0.004–0.011 (0.007) | 1 | 0.124–0.127 (0.126) |
C. loxodontis | 2 | 2 | 0.006 | 1 | 0.101–0.109 (0.105) |
C. macintoshi | 3 | 3 | 0.004 | 1 | 0.153–0.156 (0.155) |
C. magnus | 6 | 3 | 0–0.007 (0.002) | 0.6 | 0.134–0.142 (0.136) |
C. milnei | 1 | 1 | – | – | 0.169 |
C. miombo | 13 | 4 | 0–0.002 (0.0005) | 0.423 | 0.114–0.116 (0.114) |
C. moreli | 6 | 5 | 0.004–0.006 (0.003) | 0.933 | 0.193–0.199 (0.195) |
C. murphyi | 15 | 6 | 0–0.002 (0.0004) | 0.79 | 0.142–0.147 (0.144) |
C. neavei | 2 | 2 | 0.099 | 1 | 0.161–0.169 (0.165) |
C. nevilli | 9 | 9 | 0.011–0.013 (0.012) | 1 | 0.045–0.164 (0.052) |
C. nivosus | 5 | 4 | 0–0.064 (0.016) | 0.9 | 0.160–0.164 (0.162) |
C. ovalis | 1 | 1 | – | – | 0.175 |
C. oxystoma | 14 | 12 | 0–0.022 (0.005) | 0.978 | 0.082–0.104 (0.088) |
C. pseudopallidipennis | 13 | 8 | 0–0.009 (0.001) | 0.935 | 0.063–0.072 (0.068) |
C. pycnostictus | 2 | 2 | 0.009 | 1 | 0.153–0.156 (0.154) |
C. ravus | 3 | 2 | 0–0.033 (0.011) | 0.666 | 0.132–0.137 (0.135) |
C. schultzei | 2 | 2 | 0.018 | 1 | 0.087–0.094 (0.09) |
C. similis | 7 | 4 | 0–0.107 (0.017) | 0.809 | 0.132–0.164 (0.152) |
Culicoides sp. #20a | 6 | 5 | 0–0.004 (0.002) | 0.933 | 0.137–0.145 (0.141) |
Culicoides sp. #22a | 5 | 1 | 0 | 0 | 0.101 |
Culicoides sp. #54a | 1 | 1 | – | – | 0.166 |
C. subschultzei | 6 | 6 | 0.004–0.011 (0.006) | 1 | 0.045–0.049 (0.047) |
C. tororoensis | 2 | 1 | 0 | 0 | 0.163 |
C. tropicalis | 3 | 2 | 0–0.013 (0.004) | 0.666 | 0.127 |
C. tuttifrutti | 4 | 3 | 0–0.011 (0.003) | 0.833 | 0.063–0.075 (0.071) |
C. zuluensis | 8 | 6 | 0–0.015 (0.004) | 0.928 | 0.169–0.201 (0.185) |