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Table 2 Features of the 11 newly discovered introns and intron-containing genes in T. vaginalis

From: Spliceosomal introns in Trichomonas vaginalis revisited

Gene ID Predicted function Intron length (bp) Exon/Intron GC content IPa RIPb Intron phase Exon/Exon nucleotide sequence Exon/Exon amino acid sequencec
TVAG_306990 CMGC family protein kinase 93 43.18/29.03 307 0.25 0 ATAC/ATTA LAY/IKA
TVAG_217460 Hypothetical protein 72 35.51/31.94 120 0.1 2 TAGA/CTGT YEL/dCE
TVAG_147850 CAMK family protein kinase 68 36.72/25.0 533 0.45 1 CCAA/AATA GSP/kYV
TVAG_416520 Hypothetical protein 26 41.63/30.77 109 0.17 0 TGAA/AATT FSE/NYV
TVAG_043580 Mob1 phocein family 25 35.15/28.0 21 0.03 2 AAAT/GCAT FSK/mHS
TVAG_056030 Hypothetical protein 25 40.33/24.0 137 0.42 1 GTTT/ATGG RPV/yGL
TVAG_089630 AGC family protein kinase 25 37.39/24.0 78 0.06 2 GGAT/TGAG DNR/iEI
TVAG_134480 Putative protein kinase 25 nd/24.0 78 0.08 2 GGAT/TGAG DNR/iEI
TVAG_242770 Hypothetical protein 25 37.21/36.0 93 0.07 2 AATA/TTTG IIK/yLK
TVAG_324910 Hypothetical protein 25 nd/24.0 327 nd 2 AAAT/ATAT LIE/iYK
TVAG_203580 Hypothetical protein 25 34.77/24.0 165 0.12 2 AATA/TATT LTE/yIL
  1. aIntron position (IP) indicates the amino acid position of the intron relative to the first ATG in the open reading frame
  2. bRelative intron position (RIP) indicates the intron position relative to the total gene ORF length
  3. cAmino acids interrupted by phase 1 or 2 introns are shown in lower case
  4. Abbreviations: nd, not determined (because of ambiguity of DNA sequence or incomplete length of CDS, as per TrichDB)