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Table 1 Details of Japanese encephalitis virus strains detected from culicines, captured in Shanghai during May to November 2016

From: New strains of Japanese encephalitis virus circulating in Shanghai, China after a ten-year hiatus in local mosquito surveillance

Strain Host Collection date Geographical location Habitat GenBank ID
NS5 E prM
PD3G_16-9-S-Cut-R-10-3 Culex tritaeniorhynchus 23-Sep-16 Songjiang District Livestock farm MG686629   MG673540
PD3H_16-9-S-Cut-C-4-1 Cx. tritaeniorhynchus 2-Sep-16 Songjiang District Suburb residential area MG686630   
PD8F_16-9E-P-Cut-C-2-21 Cx. tritaeniorhynchus 2-Sep-16 Pudong New Area Suburb residential area MG686631   
QP5E_16-7L-Q-Cup-R-4-1 Cx. pipiens (s.l.) 24-Jul-16 Qingpu District Suburb residential area MG686632 MG673536 MG673541
HP4A_16-7-H-Cut-C-5-2 Cx. tritaeniorhynchus 22-Jul-16 Huangpu District Urban residential area MG686635 MG673537 MG673543
  1. Abbreviations: NS5 non-structural 5 gene, E envelope gene, prM pre-membrane gene