New strains of Japanese encephalitis virus circulating in Shanghai, China after a ten-year hiatus in local mosquito surveillance

Table 1 Details of Japanese encephalitis virus strains detected from culicines, captured in Shanghai during May to November 2016

Strain	Host	Collection date	Geographical location	Habitat	GenBank ID
Strain	Host	Collection date	Geographical location	Habitat	NS5	E	prM
PD3G_16-9-S-Cut-R-10-3	Culex tritaeniorhynchus	23-Sep-16	Songjiang District	Livestock farm	MG686629		MG673540
PD3H_16-9-S-Cut-C-4-1	Cx. tritaeniorhynchus	2-Sep-16	Songjiang District	Suburb residential area	MG686630
PD8F_16-9E-P-Cut-C-2-21	Cx. tritaeniorhynchus	2-Sep-16	Pudong New Area	Suburb residential area	MG686631
QP5E_16-7L-Q-Cup-R-4-1	Cx. pipiens (s.l.)	24-Jul-16	Qingpu District	Suburb residential area	MG686632	MG673536	MG673541
HP4A_16-7-H-Cut-C-5-2	Cx. tritaeniorhynchus	22-Jul-16	Huangpu District	Urban residential area	MG686635	MG673537	MG673543

Abbreviations: NS5 non-structural 5 gene, E envelope gene, prM pre-membrane gene