Probe | Sequence (5′–3′) | Reference |
---|---|---|
Ehrlichia/Anaplasma catch-all | GGGGGAAAGATTTATCGCTA | [21] |
Anaplasma phagocytophilum (1) | GCTATRAAGAATARTTAGTGG | [36] |
Anaplasma phagocytophilum (2) | TTGCTATRRAGAATARTTAGTGG | |
Anaplasma platys (1) | CGGATTTTTGTCGTAGCTTGCTATGAT | [36] |
Anaplasma platys (2) | GTCGTAGCTTGCTATGATA | [39] |
Ehrlichia canis (1) | TATAGCECTCTGGCGGAAATTGGTTAG | [36] |
Ehrlichia canis (2) | TCTGGCTATAGGAAATTGTTA | [37] |
Ehrlichia ewingii | TTCCTAAATAGTCTCTGACTATTT | [40] |
“Ca. Neoehrlichia mikurensis” | GCTGTAGTTTACTATGGGTA | [37] |
Theileria/Babesia catch-all | TAATGGTTAATAGGARCRGTTG | [20] |
Babesia catch-all (1) | ATTAGAGTGTTTCAAGCAGAC | [38] |
Babesia catch-all (2) | ACTAGAGTGTTTCAAACAGGC | [38] |
Babesia caballi | GTGTTTATCGCAGACTTTTGT | [20] |
Babesia canis (1) | GGTTGGTTATTTCGTTTTCGC | This study |
Babesia canis (2) | TGGTTGGTTATTTCGTTTTCG | [38] |
Babesia divergens | ACTRATGTCGAGATTGCAC | [16] |
Babesia gibsoni (1) | CTGCGTTGCCCGACTCG | [36] |
Babesia gibsoni (2) | TACTTGCCTTGTCTGGTTT | [38] |
Babesia microti (1) | GCTTYCGAGCGTTWTTTTATTG | This study |
Babesia microti (2) | GRCTTGGCATCWTCTGGA | [38] |
Babesia rodhaini | TGTGGATTAGTGCGCAAG | [38] |
Babesia rossi | CGGTTTGTTGCCTTTGTG | [41] |
Babesia venatorum | CGATTTCGCTTTTGGGATT | [12] |
Babesia vogeli | AGCGTGTTCGAGTTTGCC | [41] |
Babesia vulpes (1) | CCGAACGTAATTTTATTGATTTG | [12] |
Babesia vulpes (2) | CTTATCATTAATTTCGCTTCCGAACG | [36] |
Borrelia burgdorferi (s.l.) | CTTCCATCTCTAYTTTGCCAAT | [42] |
Borrelia burgdorferi (s.s.) | AACACCAATATTTAAAAAACATAA | [19] |
Borrelia afzelii | AACATTTAAAAAATAAATTCAAGG | [19] |
Borrelia bissetti/Borrelia carolinensis | CACTAACATTTAAAAAATATAAAATAAAAT | [42] |
Borrelia garinii (1) | AAAATCAATGTTTAAAGTATAAAAT | [43] |
Borrelia garinii (2) | AACATGAACATCTAAAAACATAAA | This study |
Borrelia lusitaniae | TTTTTAAATCAAACATTCAAAAAAAT | [42] |
Borrelia miyamotoi | AGCACAACAGGAGGGAGTTCAAGC | [44] |
Borrelia spielmanii | GTCAATATCTATTTTCTTTTTTATG | [42] |
Borrelia valaisiana (1) | CATTAAAAAAATATAAAAAATAAATTTAAGG | [19] |
Borrelia valaisiana (2) | CATGTCAATATCTATTTTATTTTTTACATTA | [42] |
Rickettsia catch-all | TTTAGAAATAAAAGCTAATACCG | [45] |
Rickettsia conorii | CTTGCTCCAGTTAGTTAGT | [45] |
Rickettsia helvetica | GCTAATACCATATATTCTCTATG | [45] |
Rickettsia massiliae | TGGGGCTTGCTCTAATTAGT | [46] |
Rickettsia raoultii | CTAATACCGCATATTCTCTACG | [12] |
“Ca. Midichloria mitochondria” | GCGAAATAACAGTTGGAAGCAAT | [18] |