Skip to main content

Table 3 Sequencing results for selected samples: rodents (n = 40), attached (n = 25) and questing ticks (n = 23), 2015–2017, Saxony, Germany

From: Long-term trends of tick-borne pathogens in regard to small mammal and tick populations from Saxony, Germany

Detected pathogen

Minimum identity (%)

GenBank IDa

Sample

Type

n

Babesia capreoli

100

KX839234

D. reticulatus

Questing

1

Babesia microti

99

KX591647

I. ricinus

Questing

1

Babesia venatorum

99

MG052939

I. ricinus

Questing

1

Bartonella doshiae

97

AJ269786

I. ricinus

Attached

1

Bartonella grahamii

100

CP001562

I. ricinus

Attached

1

D. reticulatus

Attached

3

Bartonella taylorii

99

AJ269788

I. ricinus

Attached

3

D. reticulatus

Attached

2

99

AJ269784

A. flavicollis

1

Bartonella sp. N40

97

AJ269787

I. ricinus

Attached

2

D. reticulatus

Attached

2

Bartonella sp. 15AZ DNA

99

LN847263

I. ricinus

Attached

1

Uncultured Bartonella

100

MF039571

A. flavicollis

1

95

M. glareolus

2

100

DQ155379

I. ricinus

Attached

1

99

DQ155380

M. glareolus

2

100

KX267692

I. ricinus

Attached

1

Borrelia afzelii

99

CP009058

A. flavicollis

1

100

CP018262

M. glareolus

4

100

JX971363

M. glareolus

1

Hepatozoon sp. BT-2014 isolate DB2382

99

KJ408528

A. flavicollis

1

M. glareolus

10

Hepatozoon sp. clone PCE165

99

KX776354

M. glareolus

1

Rickettsia raoultii

99

CP019435

M. glareolus

1

99

MF002527

M. glareolus

6

D. reticulatus

Questing

10

Rickettsia helvetica

99

KU310591

A. flavicollis

2

M. glareolus

7

I. ricinus

Attached

3

I. ricinus

Questing

7

99

KT835126

I. ricinus

Attached

2

I. ricinus

Questing

3

Rickettsia monacensis

100

KU961543

I. ricinus

Attached

1

Uncultured Rickettsia

95

KX591658

I. ricinus

Attached

1

D. reticulatus

Attached

1

  1. aMost similar sequence on GenBank
  2. Abbreviation: n, number of samples sequenced