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Table 3 Information on sequencing and mapping of reads to genomic data

From: Comparative analysis of transcriptional profiles of Schistosoma japonicum adult worms derived from primary-infected and re-infected water buffaloes

Sample name C1 C2 C3 T1 T2 T3
Total readsa 62,194,716 51,418,256 39,854,922 42,581,418 57,908,184 51,930,658
Total mapped (%)b 49,530,227 (79.64) 40,967,457 (79.67) 31,302,966 (78.54) 33,901,809 (79.62) 46,380,422 (80.09) 41,394,770 (79.71)
Multiple mapped (%)c 1,634,122 (2.63) 1,263,823 (2.46) 1,009,725 (2.53) 1,110,332 (2.61) 1,478,461 (2.55) 1,404,997 (2.71)
Uniquely mapped (%)d 47,896,105 (77.01) 39,703,634 (77.22) 30,293,241 (76.01) 32,791,477 (77.01) 44,901,961 (77.54) 39,989,773 (77.01)
Read-1 (%) 24,189,990 (38.89) 20,074,308 (39.04) 15,311,530 (38.42) 16,478,614 (38.7) 22,663,081 (39.14) 20,193,218 (38.88)
Read-2 (%) 23,706,115 (38.12) 19,629,326 (38.18) 14,981,711 (37.59) 16,312,863 (38.31) 22,238,880 (38.4) 19,796,555 (38.12)
Reads map to ‛+ʼ (%)e 23,840,204 (38.33) 19,786,847 (38.48) 15,100,441 (37.89) 16,352,368 (38.4) 22,390,777 (38.67) 19,940,268 (38.4)
Reads map to ‛-ʼ (%)f 24,055,901 (38.68) 19,916,787 (38.73) 15,192,800 (38.12) 16,439,109 (38.61) 22,511,184 (38.87) 20,049,505 (38.61)
  1. aSampling sequence filtered by sequencing data (clean data)
  2. bStatistics on the number of sequencing sequences that can be mapped to the genome and the number in parentheses indicates the number of sequences (total mapped reads) as a percentage (%) of clean reads
  3. cQuantitative statistics of sequencing sequences with multiple alignment positions on the reference sequence
  4. dQuantitative statistics of sequencing sequences with unique alignment positions on the reference sequence
  5. eThe statistics of the sequencing sequence alignment to the positive strands on the genome
  6. fThe statistics of the sequencing sequences aligned to the negative strands on the genome