Skip to main content

Table 3 Information on sequencing and mapping of reads to genomic data

From: Comparative analysis of transcriptional profiles of Schistosoma japonicum adult worms derived from primary-infected and re-infected water buffaloes

Sample name

C1

C2

C3

T1

T2

T3

Total readsa

62,194,716

51,418,256

39,854,922

42,581,418

57,908,184

51,930,658

Total mapped (%)b

49,530,227 (79.64)

40,967,457 (79.67)

31,302,966 (78.54)

33,901,809 (79.62)

46,380,422 (80.09)

41,394,770 (79.71)

Multiple mapped (%)c

1,634,122 (2.63)

1,263,823 (2.46)

1,009,725 (2.53)

1,110,332 (2.61)

1,478,461 (2.55)

1,404,997 (2.71)

Uniquely mapped (%)d

47,896,105 (77.01)

39,703,634 (77.22)

30,293,241 (76.01)

32,791,477 (77.01)

44,901,961 (77.54)

39,989,773 (77.01)

Read-1 (%)

24,189,990 (38.89)

20,074,308 (39.04)

15,311,530 (38.42)

16,478,614 (38.7)

22,663,081 (39.14)

20,193,218 (38.88)

Read-2 (%)

23,706,115 (38.12)

19,629,326 (38.18)

14,981,711 (37.59)

16,312,863 (38.31)

22,238,880 (38.4)

19,796,555 (38.12)

Reads map to ‛+ʼ (%)e

23,840,204 (38.33)

19,786,847 (38.48)

15,100,441 (37.89)

16,352,368 (38.4)

22,390,777 (38.67)

19,940,268 (38.4)

Reads map to ‛-ʼ (%)f

24,055,901 (38.68)

19,916,787 (38.73)

15,192,800 (38.12)

16,439,109 (38.61)

22,511,184 (38.87)

20,049,505 (38.61)

  1. aSampling sequence filtered by sequencing data (clean data)
  2. bStatistics on the number of sequencing sequences that can be mapped to the genome and the number in parentheses indicates the number of sequences (total mapped reads) as a percentage (%) of clean reads
  3. cQuantitative statistics of sequencing sequences with multiple alignment positions on the reference sequence
  4. dQuantitative statistics of sequencing sequences with unique alignment positions on the reference sequence
  5. eThe statistics of the sequencing sequence alignment to the positive strands on the genome
  6. fThe statistics of the sequencing sequences aligned to the negative strands on the genome