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Table 2 Codon usage analysis of PCGs in the mitochondrial genome of Benedenia humboldti n. sp. from the South-East Pacific

From: The complete mitochondrial genome and description of a new cryptic species of Benedenia Diesing, 1858 (Monogenea: Capsalidae), a major pathogen infecting the yellowtail kingfish Seriola lalandi Valenciennes in the South-East Pacific

AA

Codon

n

Frequency/1000

Fraction

AA

Codon

N

Frequency/1000

Fraction

Ala

GCG

1

0.31

0.01

Pro

CCG

2

0.62

0.02

 

GCA

12

3.71

0.13

 

CCA

8

2.47

0.10

 

GCT

73

22.57

0.78

 

CCT

53

16.39

0.65

 

GCC

8

2.47

0.09

 

CCC

18

5.57

0.22

Cys

TGT

78

24.12

0.86

Gln

CAG

12

3.71

0.33

 

TGC

13

4.02

0.14

 

CAA

24

7.42

0.67

Asp

GAT

43

13.30

0.80

Arg

CGG

9

2.78

0.19

 

GAC

11

3.40

0.20

 

CGA

9

2.78

0.19

Glu

GAG

27

8.35

0.44

 

CGT

28

8.66

0.60

 

GAA

35

10.82

0.56

 

CGC

1

0.31

0.02

Phe

TTT

354

109.46

0.93

Ser

AGG

21

6.49

0.06

 

TTC

26

8.04

0.07

 

AGA

41

12.68

0.12

Gly

GGG

28

8.66

0.16

 

AGT

103

31.85

0.30

 

GGA

20

6.18

0.12

 

AGC

14

4.33

0.04

 

GGT

110

34.01

0.64

 

TCG

4

1.24

0.01

 

GGC

14

4.33

0.08

 

TCA

18

5.57

0.05

His

CAT

40

12.37

0.69

 

TCT

125

38.65

0.37

 

CAC

18

5.57

0.31

 

TCC

16

4.95

0.05

Ile

ATA

124

38.34

0.39

Thr

ACG

5

1.55

0.04

 

ATT

172

53.18

0.54

 

ACA

25

7.73

0.21

 

ATC

20

6.18

0.06

 

ACT

78

24.12

0.65

Lys

AAG

51

15.77

1.00

 

ACC

12

3.71

0.10

Leu

TTG

79

24.43

0.15

Val

GTG

49

15.15

0.20

 

TTA

311

96.17

0.58

 

GTA

82

25.36

0.33

 

CTG

19

5.88

0.04

 

GTT

111

34.32

0.44

 

CTA

42

12.99

0.08

 

GTC

8

2.47

0.03

 

CTT

67

20.72

0.13

Trp

TGG

35

10.82

0.49

 

CTC

14

4.33

0.03

 

TGA

36

11.13

0.51

Met

ATG

65

20.10

1.00

Tyr

TAT

153

47.31

0.79

Asn

AAA

92

28.45

0.45

 

TAC

41

12.68

0.21

 

AAT

94

29.07

0.46

Stop

TAG

6

1.86

0.50

 

AAC

20

6.18

0.10

 

TAA

6

1.86

0.50