Parasites & Vectors

Table 3 Pre-treatment results of data quality in the high throughput sequencing

From: Transcriptomic analysis of reproductive damage in the epididymis of male Kunming mice induced by chronic infection of Toxoplasma gondii PRU strain

Sample	Raw data reads	Base	Valid data reads	Base	Valid reads %	Q20%	Q30%	GC%
PRU-1	42,640,370	6.4G	41,484,632	6.22G	97.29	98.77	90.81	46.5
PRU-2	49,368,291	7.4G	48,326,910	7.25G	97.89	98.47	90.93	48.0
PRU-3	43,890,326	6.58G	42,897,451	6.44G	97.74	98.93	90.25	47.7
Control-1	62,208,188	9.33G	60,729,140	9.11G	97.62	98.86	91.00	47.5
Control-2	58,037,289	8.7G	57,291,719	8.6G	98.71	98.72	90.35	50.0
Control-3	65,038,924	9.76G	63,902,392	9.59G	98.25	99.04	91.37	46.5

Notes: Q20%, error rate is 1%, or the correct rate is 99%; Q30%, error rate is 0.1%, or the correct rate is 99.9%

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