Skip to main content

Table 3 Pre-treatment results of data quality in the high throughput sequencing

From: Transcriptomic analysis of reproductive damage in the epididymis of male Kunming mice induced by chronic infection of Toxoplasma gondii PRU strain

Sample Raw data reads Base Valid data reads Base Valid reads % Q20% Q30% GC%
PRU-1 42,640,370 6.4G 41,484,632 6.22G 97.29 98.77 90.81 46.5
PRU-2 49,368,291 7.4G 48,326,910 7.25G 97.89 98.47 90.93 48.0
PRU-3 43,890,326 6.58G 42,897,451 6.44G 97.74 98.93 90.25 47.7
Control-1 62,208,188 9.33G 60,729,140 9.11G 97.62 98.86 91.00 47.5
Control-2 58,037,289 8.7G 57,291,719 8.6G 98.71 98.72 90.35 50.0
Control-3 65,038,924 9.76G 63,902,392 9.59G 98.25 99.04 91.37 46.5
  1. Notes: Q20%, error rate is 1%, or the correct rate is 99%; Q30%, error rate is 0.1%, or the correct rate is 99.9%