Skip to main content

Advertisement

Table 3 Pre-treatment results of data quality in the high throughput sequencing

From: Transcriptomic analysis of reproductive damage in the epididymis of male Kunming mice induced by chronic infection of Toxoplasma gondii PRU strain

SampleRaw data readsBaseValid data readsBaseValid reads %Q20%Q30%GC%
PRU-142,640,3706.4G41,484,6326.22G97.2998.7790.8146.5
PRU-249,368,2917.4G48,326,9107.25G97.8998.4790.9348.0
PRU-343,890,3266.58G42,897,4516.44G97.7498.9390.2547.7
Control-162,208,1889.33G60,729,1409.11G97.6298.8691.0047.5
Control-258,037,2898.7G57,291,7198.6G98.7198.7290.3550.0
Control-365,038,9249.76G63,902,3929.59G98.2599.0491.3746.5
  1. Notes: Q20%, error rate is 1%, or the correct rate is 99%; Q30%, error rate is 0.1%, or the correct rate is 99.9%