Representative haplotypes, genotypes and species
|
Host
|
cox1 (GenBank ID)
|
nad1 (GenBank ID)
|
Reference
|
---|
E.gKh63
|
Jackal
|
scox1-1 (KT697626)
|
snad1-1 (KT697629)
|
This study
|
E.gKh75
|
Dog
|
scox1-2 (KT033487)
|
snad1-1 (KT033488)
|
This study
|
E.gKh77
|
Dog
|
scox1-1 (KX186686)
|
snad1-1 KX186689)
|
This study
|
E.gKh86
|
Wolf
|
scox1-1 (KT697627)
|
snad1-1 (KT697630)
|
This study
|
E.gKh87
|
Dog
|
scox1-1 (KT697628)
|
snad1-1 (KT697631)
|
This study
|
E.gKh90
|
Jackal
|
scox1-1 (KX186687)
|
snad1-1 KX186690)
|
This study
|
E.gKh96
|
Dog
|
scox1-1 (KX186688)
|
snad1-1(KX186691)
|
This study
|
E.mKh2
|
Fox
|
scox1-3 (KT318127)
|
snad1-2(KT318129)
|
This study
|
E.mKh4
|
Jackal
|
scox1-3 (KT033486)
|
snad1-3 KT033489)
|
This study
|
E.mKh11
|
Fox
|
scox1-3 (KT318128)
|
snad1-2 (KT318130)
|
This study
|
E.mKh20
|
Jackal
|
scox1-3 (KX186692)
|
snad1-2(KX186699)
|
This study
|
E.mKh22
|
Jackal
|
scox1-3 (KX186693)
|
snad1-2 KX186700)
|
This study
|
E.mKh30
|
Jackal
|
scox1-3 (KX186694)
|
snad1-2 KX186701)
|
This study
|
E.mKh41
|
Jackal
|
scox1-3 (KX186695)
|
snad1-2 KX186702)
|
This study
|
E.mKh47
|
Jackal
|
scox1-3 (KX186696)
|
snad1-2(KX186703)
|
This study
|
E.mKh55
|
Jackal
|
scox1-3 (KX186697)
|
snad1-2(KX186704)
|
This study
|
E.mKh81
|
Jackal
|
scox1-3 (KX186698)
|
snad1-2(KX186705)
|
This study
|
Echinococcus genotypes/species
|
G1a
|
Sheep
|
na
|
AJ237632
|
[12, 13]
|
G1b
|
Sheep
|
AF297617
|
AF297617
|
[69]
|
G2
|
Sheep
|
M84662
|
AJ237633
|
[12, 13]
|
G3a
|
Buffalo
|
M84663
|
AJ237634
|
[12, 13]
|
G3b
|
Sheep
|
DQ856466
|
DQ856469
|
[70]
|
G4
|
Horse
|
M84664
|
AJ237635
|
[12, 13]
|
G5
|
Cattle
|
M84665
|
AJ237636
|
[12, 13]
|
G6a
|
Camel
|
M84666
|
AJ237637
|
[12, 13]
|
G6b
|
Camel
|
NC-011121
|
NC-011121
|
[67]
|
G7a
|
Pig
|
M84667
|
AJ237638
|
[12, 13]
|
G7b
|
Goat
|
DQ856468
|
DQ856471
|
[70]
|
G8
|
Moose
|
AB235848
|
AB235848
|
[67]
|
G10
|
Reindeer
|
AF525457
|
AF525297
|
[71]
|
E. felidis
|
Lion
|
EF558356
|
EF558357
|
[66]
|
E. multilocularisa
|
Human
|
M84668
|
AJ237639
|
[12, 13]
|
E. multilocularisb
|
Rodent
|
M84669
|
AJ237640
|
[12, 13]
|
E. shiquiqus
|
Pika
|
AB208064
|
AB208064
|
[67]
|
E. vogeli
|
Rodent
|
M84670
|
AJ237641
|
[12, 13]
|
E. oligarthrus
|
Rodent
|
M84671
|
AJ237642
|
[12, 13]
|
Outgroup
|
T. saginata
|
Cattle
|
na
|
AJ239106
|
[72, 73]
|
- a, bRelated to Fig. 7
- Note: Representative haplotypes used in the phylogenetic analysis are indicated in bold
- Abbreviation: na, not available