Multilocus sequence typing of Enterocytozoon bieneusi in crab-eating macaques (Macaca fascicularis) in Hainan, China

Table 3 Genetic diversity in 53 Enterocytozoon bieneusi samples based on the analysis of concatenated multilocus sequences (2661 bp in length)

Test model	Variability of multilocus sequences
Test model	No. MLGs	Hd	k	Pi	Theta (k)	Fs (obs)	P (Fs ≤ obs)	Z_ns (obs)	P (Z_ns ≤ obs)	LD (\|D′\|)	Rm
Polymorphic sites	33	0.98	16	0.009	16	− 5.56	0.158
Segregating sites	33	0.98	14	0.008	14	− 6.91	0.122	0.185	0.976	Y = 0.8679 − 0.2781X	10

Abbreviations: MLG, multilocus genotype; Hd, gene diversity; k, mean number of pairwise differences; Pi, nucleotide diversity (average over loci); theta (k), genetic variance based on the mean number of pairwise differences; Fs, Fu’s statistic testing selective neutrality based on genotype frequency; Obs, observed value; P (Fs ≤ Obs), probability of obtaining Fs values equal or lower than the observed; Z_ns (obs), observed Z_ns value; P (Z_ns ≤ Obs), probability of obtaining Z_ns values equal or lower than the observed; LD (|D′|), linkage disequilibrium per site; Rm, minimum number of recombination events

ISSN: 1756-3305