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Table 2 Cox1, SSU HVR-I and HVR-IV haplotypes of S. stercoralis from northern and western Thailand

From: Genomic studies on Strongyloides stercoralis in northern and western Thailand

Sample ID

Source

Location

(District/Province)

cox1 haplotypec

SSU HVR-I + HVR-IV haplotyped

I + A

II + A

S9

Residentsa

Doi Lo/Chiang Mai

H6 (1), H8 (15)

15

S10

Doi Lo/Chiang Mai

H9 (16)

15

S12

Mae Tha/Lamphun

H9 (12), H11 (2), H12 (1)

2

6

S13

Mae Tha/Lamphun

H3 (10), H10 (5)

11

S14

Hospital patientsb

San Pa Tong/Chiang Mai

H1 (21)

9

S16

Mae On/Chiang Mai

H10 (13)

6

S17

San Pa Tong/Chiang Mai

H1 (15)

9

S19

Mueang/Chiang Mai

H9 (16)

4

3

S20

Pai/Mae Hong Son

H7 (16)

8

S21

Chiang Dao/Chiang Mai

H2 (16)

9

S22

Mae Sot/Tak

H5 (13)

1

S23

Mae On/Chiang Mai

H10 (14)

13

S24

Mueang Pan/Lampang

H4 (3), H12 (12)

9

S25

na

H10 (15), H12 (1)

8

S27

Mae Tha/Lamphun

H10 (1), H12 (12)

7

S28

Doi Lo/Chiang Mai

H12 (15)

7

  1. aClinically healthy people sampled at home
  2. bHospital patients parasitologically surveyed as part of the routine procedures of the hospital. These patients were not admitted to the hospital because of strongyloidiasis, but for other reasons
  3. cHX indicates the haplotype number, the number in parenthesis indicates in how many individuals the particular haplotype was found. For the sequences of the haplotypes see GenBank accession numbers MN871994-MN872230
  4. dFor the nomenclature see [16, 22]. Note that the numbers of worms for which the cox1 and the SSU sequences were successfully determined are not identical