Population
|
No. of sequences
(No. of haplotypes)
|
S
|
Pi
|
Hd
|
Neutrality test
|
Goodness-of-fit
|
---|
Tajima’s D
|
Fu’s Fs
|
SSD
|
Hrag
|
---|
Bouemba
|
88 (9)
|
0.9882
|
0.0022
|
0.5815
|
− 1.13378 (P = 0.13)
|
− 3.22268 (P = 0.086)
|
0.00224 (P = 0.568)
|
0.05537 (P = 0.706)
|
Talangai
|
87 (21)
|
6.8209
|
0.0152
|
0.8062
|
− 2.76701 (P< 0.0001)
|
− 1.05260 (P = 0.420)
|
0.01219 (P = 0.778)
|
0.02424 (P = 0.866)
|
Bomassa
|
88 (25)
|
7.0867
|
0.0158
|
0.8602
|
− 2.64837 (P <0.0001)
|
− 2.86023 (P = 0.2180)
|
0.02735 (P = 0.178)
|
0.06618 (P = 0.115)
|
- Note: Tajima’s D, significance of P < 0.01 is highlighted in bold. Number of haplotypes and Tajima’s D, Fu’s Fs, SSD and Hrag P-values are in parentheses
- Abbreviations: S, number of segregating sites; Pi, nucleotide diversity; Hd, haplotype diversity; SSD, sum of squared deviation between the observed and expected distribution of pairwise differences; Hrag, Harpending’s raggedness index (non-significant, data have relatively good fit to a model of population expansion) and a ragged distribution suggests that the lineage was widespread