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Table 3 Sequencing results of the six divergent regions of 28S rDNA for the nine mite species

From: Divergent domains of 28S ribosomal RNA gene: DNA barcodes for molecular classification and identification of mites

DD

Mite species

Length

SR%

GenBank ID

CRS

GenBank ID

I/C

D2

D. farinae

450–542

20.0 (2/10)

MH540331–32

D. farinae

JQ000555

98/100

P. cuniculi

533

40.0 (4/10)

MH540338–41

P. ovis

JQ000549

98/100

S. canis

465–550

10.0 (1/10)

MH540342

Mesalgoides sp.

JQ000537

77/100

O. bacoti

465

100 (5/5)

MH540333–37

O. bursa

FJ911789

92/100

C. malaccensis

617

10.0 (1/10)

MH540329

H. simplex

KP325024

99/100

D. folliculorum

/

0 (0/20)

–

–

–

–

D. brevis

/

0 (0/20)

–

–

–

–

D. canis

/

0 (0/20)

–

–

–

–

D. caprae

773

5.0 (1/20)

MH540330

H. holopus

KY922056

74/34

D3

D. farinae

252

50.0 (5/10)

MH001311–15

D. farinae

JQ000555

99/100

P. cuniculi

252–256

40.0 (4/10)

MH001324–27

P. ovis

JQ000549

99/100

S. canis

256

0 (0/10)

 

–

–

–

O. bacoti

256

100 (5/5)

MH001318–22

C. haematophagus

FJ911790

99/100

C. malaccensis

312–313

50.0 (5/10)

MH001306–10

Oudemansicheyla sp.

KP276422

76/100

D. folliculorum

–

0 (0/20)

–

–

–

–

D. brevis

358–362

20.0 (4/20)

MH540325–28

D. folliculorum

KY922058

78/96

D. canis

368

10.0 (2/20)

MH540323–24

D. folliculorum

KY922058

86/95

D. caprae

–

0 (0/20)

–

–

–

–

D5

D. farinae

419

50.0 (5/10)

MH001255–59

D. farinae

JQ000555

100/100

P. cuniculi

419

60.0 (6/10)

MH001275–80

P. ovis

JQ000549

100/100

S. canis

413–423

30.0 (3/10)

MH001267–69

Cystoidosoma sp.

JQ000474

97/100

O. bacoti

413

100 (5/5)

MH001260–64

Melicharidae sp.

KP276394

99/100

C. malaccensis

436

100 (5/5)

MH001270–74

Oudemansicheyla sp.

KP276422

93/100

D. folliculorum

456

83.3 (5/6)

KY305302–05, KY347877

D. folliculorum

KY347877

99/100

D. brevis

438–442

75.0 (6/8)

KY305306–11

D. brevis

HQ718592

98/100

D. canis

445–459

85.7 (6/7)

KY305312–17

D. folliculorum

KY347877

93/100

D. caprae

502–507

71.4 (5/7)

KY305318–22

D. folliculorum

KY347877

83/100

D6

D. farinae

202

40.0 (2/5)

MH001286, MH001290

D. farinae

JQ000555

99/100

P. cuniculi

192–200

40.0 (2/5)

MH001296, MH001300

P. ovis

JQ000549

99/100

S. canis

195–202

20.0 (1/5)

MH001301

C. amazonae

KP325029

93/100

O. bacoti

195

83.3 (5/6)

MH001291–95

Melicharidae sp.

KP276394

98/100

C. malaccensis

195–198

40.0 (4/10)

MH001281–84

Oudemansicheyla sp.

KP276422

93/100

D. folliculorum

241

100 (6/6)

KY305302–05, KY347876–77

D. folliculorum

KY347876

99/100

D. brevis

232

75.0 (6/8)

KY305306–11

D. brevis

HQ718592

99/100

D. canis

201

85.7 (6/7)

KY305312–17

D. brevis

HQ718592

85/100

D. caprae

228–230

71.4 (5/7)

KY305318–22

D. brevis

HQ718592

90/100

D7

D. farinae

450–460

33.3 (2/6)

MH001334,36

D. farinae

JQ000555

100/100

P. cuniculi

450–468

30.0 (3/10)

MH001343, MH001346, MH001347

P. ovis

JQ000549

100/100

S. canis

450–501

30.0 (3/10)

MH001349–51

A. ocelatus

JQ000623

89/100

O. bacoti

450

50.0 (5/10)

MH001338–42

Laelapidae sp.

KP276392

96/100

C. malaccensis

450

0/15

–

–

–

–

D. folliculorum

450

0/15

–

–

–

–

D. brevis

450

0/15

–

–

–

–

D. canis

450

0/15

–

–

–

–

D. caprae

450

0/15

–

–

–

–

D8

D. farinae

314

100 (5/5)

MH001240–44

D. farinae

JQ000555

100/100

P. cuniculi

314

100 (5/5)

MH001250–54

P. ovis

JQ000549

100/100

S. canis

302–322

30.0 (3/10)

MH001229, MH001230, MH001234

C. amazonae

KP325029

87/100

O. bacoti

302

100 (5/5)

MH001245–49

Laelapidae sp.

KP276392

95/100

C. malaccensis

393

50.0 (5/10)

MH001235–39

Oudemansicheyla sp.

KP276422

74/100

D. folliculorum

519

100 (5/5)

KY305323–27

D. folliculorum

HQ728004

100/100

D. brevis

428–432

85.7 (6/7)

KY305328–33

D. folliculorum

HQ728004

96/92

D. canis

541–543

100 (5/5)

KY305334–38

D. canis

HQ728002

99/100

D. caprae

516

100 (6/6)

KY305339–44

D. folliculorum

HQ728004

86/100

  1. Abbreviations: DD, divergent domains; SR, sequencing success rate; CRS, closely related species; I/C, identity/coverage; D. farinae, Dermatophagoides farinae; P. cuniculi, Psoroptes cuniculi; S. canis, Sarcoptes scabiei canis; O. bacoti, Ornithonyssus bacoti; C. malaccensis, Cheyletus malaccensis; D. folliculorum, Demodex folliculorum; D. brevis, Demodex brevis; D. canis, Demodex canis; D. caprae, Demodex caprae; P. ovis, Psoroptes ovis; O. bursa, Ornithonyssus bursa; H. simplex, Haplochthonius simplex; H. holopus, Harpypalpus holopus; C. haematophagus, Chiroptonyssus haematophagus; C. amazonae, Chirnyssoides amazonae; A. ocelatus, Amerodectes aff. ocelatus