Skip to main content

Table 4 Highest-ranking transcripts of the read mapping counts matrix in each of the five stage-specific assemblies

From: Catalogue of stage-specific transcripts in Ixodes ricinus and their potential functions during the tick life-cycle

Contig ID Best blast hit Description
Egg
 c77007_g1 EEC13590.1 Conserved hypothetical protein
 c80053_g1 EEC03440.1 Hypothetical protein IscW_ISCW003437
 c80189_g5 A0A147BJ18 (IPR000859) Putative conserved protein (CUB domain profile)
  c77756_g1 EEC05138.1 Unknown IscW_ISCW005232
 c76180_g1 EEC15123.1(GO:0006508; GO:0008234; IPR000169) Cathepsin-like protease (proteolysis; cysteine-type peptidase activity; eukaryotic thiol (cysteine) proteases asparagine active site)
Larva
 c73350_g2 XP_029826130.1 (PR01217) Loricrin-like (LOC115311581) (proline-rich extensin signature)
 c72525_g1 XP_029826132.1 (PR01228) Glycine-rich cell wall structural protein 1.8-like (eggshell protein signature)
 c82554_g1 EEC03354.1 (GO:0016747; IPR002656) Conserved unknown (transferase activity, transferring acyl groups other than amino-acyl groups; acyltransferase family)
 c72929_g1 EEC07345.1 Secreted protein
 c69133_g1 EEC18324.1 Secreted protein
Fed nymph
 c23277_g1 JAA67414.1, A0A0K8RAB4 (PR01217) Putative glycine rich protein (proline-rich extensin signature)
 c80070_g2 V5I1K9 Putative salivary secreted protein of 21.3 kDa (fragment)
 c78019_g4 EEC02888.1 (GO:0042302; IPR000618) Cuticle protein (structural constituent of cuticle; chitin-binding type R&R domain profile; insect cuticle protein)
 c81210_g1 Q9GP09 Unknown
 c75846_g6 EEC18809.1 (PR01217) Unknown IscW_ISCW023478 (proline-rich extensin signature)
Female
 c69267_g3 A0A0K8RIE7 (AAY66590.1) Putative wc protein, secreted protein
 c79150_g3 EEC14461.1 Unknown IscW_ISCW021550
 c75091_g1 EEC18324.1 Secreted protein
 c69267_g2 A0A0K8RB73 (AAY66559.1) Putative wc protein, secreted salivary protein
 c1565_g1 AAY66620.1, A0A0K8RG69 Secreted protein
Fed female
 c79317_g2 EEC18889.1 (GO:0005319; GO:0006869; IPR001747; IPR001846) Vitellogenin (lipid transporter activity; lipid transport; VWFD domain profile; von Willebrand factor type D domain; vitellogenin domain profile)
 c79647_g1 EEC14155.1 (GO:0042302; IPR000618) Cuticle protein (structural constituent of cuticle; Chitin-binding type R&R domain profile; insect cuticle protein)
 c73798_g1 V5I261 (GO:0030682; GO:0043176; IPR002970) Putative lipocal-1 1 lipocalin (Fragment) (evasion or tolerance of host defenses; amine binding; tick histamine binding protein)
 c80433_g1 A0A147BKD0 (GO:0005319; GO:0006869; IPR001747; IPR001846) Putative vitellogenin 2 (Fragment) (lipid transporter activity; lipid transport; VWFD domain profile; von Willebrand factor type D domain; vitellogenin domain profile)
 c74644_g1 A0A0K8RN13 (GO:0042302; IPR000618) Putative cuticle protein (fragment) (structural constituent of cuticle; chitin-binding type R&R domain profile; insect cuticle protein)
  1. Notes: Accession numbers of the best blast hits and their description are supplied. GO term and/or IPS annotations including their respective descriptions are also listed when available