The complete mitochondrial genome of the Columbia lance nematode, Hoplolaimus columbus, a major agricultural pathogen in North America

Table 3 Codon usage analysis of PCGs in the mitochondrial genome of Hoplolaimus columbus from South Carolina, USA

AmAcid	Codon	Number	/1000	Fraction	AmAcid	Codon	Number	/1000	Fraction
Ala	GCG	1	0.29	0.02	Pro	CCG	3	0.88	0.05
	GCA	11	3.24	0.17		CCA	13	3.83	0.23
	GCT	43	12.68	0.66		CCT	31	9.14	0.55
	GCC	10	2.95	0.15		CCC	9	2.65	0.16
Cys	TGT	20	5.9	0.77	Gln	CAG	16	4.72	0.47
Cys	TGC	6	1.77	0.23	Gln	CAA	18	5.31	0.53
Asp	GAT	65	19.17	0.94	Arg	CGG	8	2.36	0.3
Asp	GAC	4	1.18	0.06		CGA	7	2.06	0.26
Glu	GAG	37	10.91	0.43		CGT	11	3.24	0.41
Glu	GAA	50	14.74	0.57		CGC	1	0.29	0.04
Phe	TTT	601	177.23	0.96	Ser	AGG	37	10.91	0.12
Phe	TTC	23	6.78	0.04		AGA	82	24.18	0.26
Gly	GGG	38	11.21	0.19		AGT	68	20.05	0.22
	GGA	67	19.76	0.34		AGC	3	0.88	0.01
	GGT	85	25.07	0.42		TCG	2	0.59	0.01
	GGC	10	2.95	0.05		TCA	30	8.85	0.1
His	CAT	49	14.45	0.96		TCT	80	23.59	0.26
His	CAC	2	0.59	0.04		TCC	10	2.95	0.03
Ile	ATT	262	77.26	0.94	Thr	ACG	1	0.29	0.02
Ile	ATC	16	4.72	0.06		ACA	17	5.01	0.27
Lys	AAG	45	13.27	0.35		ACT	43	12.68	0.67
Lys	AAA	82	24.18	0.65		ACC	3	0.88	0.05
Leu	TTG	101	29.78	0.17	Val	GTG	17	5.01	0.07
	TTA	398	117.37	0.68		GTA	76	22.41	0.33
	CTG	7	2.06	0.01		GTT	118	34.8	0.52
	CTA	29	8.55	0.05		GTC	18	5.31	0.08
	CTT	43	12.68	0.07	Trp	TGG	36	10.62	0.44
	CTC	5	1.47	0.01	Trp	TGA	45	13.27	0.56
Met	ATG	36	10.62	0.21	Tyr	TAT	145	42.76	0.93
Met	ATA	139	40.99	0.79	Tyr	TAC	11	3.24	0.07
Asn	AAT	135	39.81	0.98	End	TAG	5	1.47	0.56
Asn	AAC	3	0.88	0.02	End	TAA	4	1.18	0.44

ISSN: 1756-3305