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Table 3 Intraspecific comparison of nucleotide sequences and number of haplotypes for cox1 and ITS2 in 5 species of Anopheles of Honduras

From: Distribution and phylogenetic diversity of Anopheles species in malaria endemic areas of Honduras in an elimination setting

Marker

An. albimanus

An. crucians

An. darlingi

An. pseudopunctipennis

An. vestitipennis

cox1

 Length

712

711

684

684

681

 n

103

14

16

11

14

 Identical sites

659

600

682

654

596

 Identical sites (%)

92.6

85.3

99.7

95.6

87.5

 Pairwise % identity

99.1

95.8

99.9

98.9

97.7

 π

0.01

0.05

0.00

0.01

0.03

 No. of haplotypes

55

13

3

11

10

 Haplotypes/N

0.53

0.93

0.19

1.0

0.71

ITS2

 Length

566

380

596

567

576

 n

76

13

10

7

14

 Identical sites

552

367

593

549

567

 Identical sites (%)

97.7

99.5

99.5

97.0

98.6

 Pairwise % identity

99.9

99.9

99.9

99.1

99.7

 π

0.0

0.0

0.0

0.0

0.0

 No. of haplotypes

3

1

1

3

4

 Haplotypes/N

0.04

0.08

0.1

0.43

0.29