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Table 2 Nucleotide variation in ITS gene region of E. bieneusi isolates obtained in this study

From: Identification and genotyping of Enterocytozoon bieneusi in wild Himalayan marmots (Marmota himalayana) and Alashan ground squirrels (Spermophilus alashanicus) in the Qinghai-Tibetan Plateau area (QTPA) of Gansu Province, China

Genotype

GenBank ID

Nucleotide at position (ITS)

17

30

31

51

52

92

93

113

117

125

158

177

192

219

Novel

 HN39

MN378365

G

T

G

G

T

G

C

C

T

A

T

C

G

G

 HN96

MN378366

G

C

A

G

T

G

T

T

G

A

C

T

A

A

 SN45

MN378369

G

C

A

G

T

G

T

T

G

G

C

C

A

A

 XH47

MN378370

T

C

A

G

T

G

T

T

G

A

C

C

A

A

 ZY37

MN378367

G

C

A

–

–

G

T

T

G

A

C

C

A

A

 ZY83

MN378371

G

C

A

G

T

–

–

T

G

A

C

C

A

A

Known

 YAK1

MK843246

G

C

A

G

T

G

T

T

G

A

C

C

A

A

  1. Note: –, base deletion; bold text, different base compared to HN39
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