Table 2 GenBank accession numbers for tpi, gdh and bg genes used for sequence analysis and in the phylogenetic tree construction
From: First multilocus sequence typing (MLST) of Giardia duodenalis isolates from humans in Romania
Gene | Assemblage | Subtype | GenBank ID |
|---|---|---|---|
bg | A | A2 | AY072723, FN386482, MN457734 |
A3 | MN457735 | ||
A2/A3 | MN457741 | ||
Not specified | JQ978667, MN457740 | ||
B | na | AY072726, AY072728, EU014384, EU216429, KP026314, KP026313, HM165226, LC437422, MN457739 | |
C | LC437440 | ||
D | LC437467 | ||
E | KC960635 | ||
F | LC341557 | ||
Outgroup | AY258618 | ||
gdh | A | A1 | AB434776, EF507606 |
A2 | AB195222, AY178735, AY178736, AY178737, AY826194, EF507674, L40510, M84604, MT078609 | ||
A3 | MT060492 | ||
Not specified | EU637582, KM190756 | ||
B | na | AB434535, AF069059, AY178738, AY826191, DQ090539, DQ090540, EF685684, EU594665, KP899844, L40508, MT060490, MT060491 | |
C | U60984 | ||
D | U60986 | ||
E | KC960651 | ||
F | AF069057 | ||
G | AF069058 | ||
Outgroup | AF069060 | ||
tpi | A | A1 | GU564274 |
A2 | AB516350, L02120, KC313923, KR105400, KR902356, KY271716, KY271722, MT060487, U57897 | ||
A3 | MT060488 | ||
Not specified | DQ650648, KJ941325, KM190773, KT369760, KU378623, MT001293 | ||
B | na | AF069560, AF069561, AY368163, AY368167, GU564279, HM140722, KC632557, KF679740, KF843920, KT357495, KT948104, KY271715, KY271717, MT060489 | |
C | AY228641 | ||
D | DQ246216 | ||
E | KF891311 | ||
G | EU781013 | ||
Outgroup | AF069564 |