Table 2 Contigs with Blast hits to the small subunit (SSU) 18S rRNA in the nt/nr database
From: Meta-transcriptomic identification of Trypanosoma spp. in native wildlife species from Australia
Host | Contig accession | Length | TPM Tryp | e-value | Hit | Gene SSU | TPM cox1 |
|---|---|---|---|---|---|---|---|
Swamp wallaby (Wallabia bicolor) #1 | VERT1_DN159759_c0_g1_i1* | 299 | 3.27 | 9E−152 | Trypanosoma sp. TL.AQ.22 | 18S rRNA | 30192.26 |
VERT1_DN215626_c0_g1_i1* | 318 | 3.06 | 3E−162 | Trypanosoma sp. TL.AQ.45 | 18S rRNA | ||
Regent honeyeater (Anthochaera phrygia) | VERT11_DN10127_c0_g1_i1* | 666 | 2.82 | 0.00E+00 | Trypanosoma thomasbancrofti | 18S rRNA | 512.02 |
Bare-nosed wombat (Vombatus ursinus) | VERT18_DN14693_c0_g1_i1* | 615 | 2.94 | 0.00E+00 | Trypanosoma sp. | 18S rRNA | 3805.74 |
VERT18_DN33207_c0_g1_i1 | 241 | 3.42 | 1E−118 | Trypanosoma sp. AB-2013 | 18S rRNA | ||
VERT18_DN9224_c0_g1_i1 | 491 | 1.87 | 0.00E+00 | Trypanosoma sp. | 18S rRNA | ||
Southern brown bandicoot (Isoodon obesulus) | VERT21_DN254377_c0_g1_i1* | 411 | 0.64 | 0.00E+00 | Trypanosoma sp. LM-2010 | 18S rRNA | 577.36 |
Koala (Phascolarctos cinereus) | VERT22_DN394953_c0_g1_i1* | 241 | 0.86 | 3E−118 | Trypanosoma irwini | 18S rRNA | 2622.98 |
Eastern dwarf tree frog (Litoria fallax) | VERT43_DN68004_c3_g3_i2* | 1728 | 46.71 | 0.00E+00 | Trypanosoma sp. 858 | 18S rRNA | 1258.51 |
Swamp wallaby (Wallabia bicolor) #2 | VERT48_DN150018_c0_g6_i1 | 718 | 55.01 | 0.00E+00 | Trypanosoma pestanai LEM 110 | 18S rRNA | 2152.22 |
VERT48_DN190740_c0_g1_i1* | 433 | 3.59 | 0.00E+00 | Trypanosoma sp. H26 | 18S rRNA | ||
VERT48_DN367248_c0_g1_i1* | 890 | 743.4 | 0.00E+00 | Trypanosoma sp. LM-2010 | 18S rRNA |