Table 2 Single nucleotide polymorphism positions of 16 genotypes and 4 haplotypes among long (321 bp) and short (170 bp) ITS2 sequences, respectively, from T. vitrinus isolates in southwest Iran
From: Phylogenetic analysis of Trichostrongylus vitrinus isolates from southwest Iran
Haplotype (170 bp) | SNPs | Sample ID | SNPs | Genotype and GenBank ID (321 bp) |
|---|---|---|---|---|
Haplotype A | 85T > C | T1; T2; T3; T4; T17; T18; T28 | 147T > C | Genotype 1 (MK271667) |
T9; T24; T35 | 37C > A; 147T > C | Genotype 2 (MK271664) | ||
T6; T16 | 62C > T; 147T > C | Genotype 3 (MK271663) | ||
T7; T21 | 37C > A; 62C > T; 147T > C | Genotype 4 (MK271666) | ||
T15; T20 | 51T > C; 147T > C | Genotype 5 (MK271674) | ||
Haplotype B | Â | T8; T25; T29; T31 | Â | Genotype 6 (MK271662) |
T10; T14; T19; T23 | 51T > C | Genotype 7 (MK271665) | ||
T13 | 47_48insT; 51T > C | Genotype 8 (MK271673) | ||
T5 | 37C > A | Genotype 9 (MK271669) | ||
Haplotype C | 34T > A; 85T > C | T26; T33; T34 | 62C > T; 96T > A; 147T > C | Genotype 10 (MK271675) |
T11 | 47_48insT; 51T > C; 96T > A; 147T > C | Genotype 11 (MK271672) | ||
T27 | 51T > C; 96T > A; 147T > C | Genotype 12 (MK271676) | ||
T32 | 96T > A; 147T > C | Genotype 13 (MK271677) | ||
T12 | 37C > A; 96T > A; 147T > C; 246T > C | Genotype 14 (MK271670) | ||
T30 | 37C > A; 62C > T; 96T > A; 147T > C | Genotype 15 (MK271668) | ||
Haplotype D | 34T > A; 85T > C; 147A > G | T22 | 37C > A; 62C > T; 96T > A; 147T > C; 209A > G; 246T > C | Genotype 16 (MK271671) |