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Table 2 Single nucleotide polymorphism positions of 16 genotypes and 4 haplotypes among long (321 bp) and short (170 bp) ITS2 sequences, respectively, from T. vitrinus isolates in southwest Iran

From: Phylogenetic analysis of Trichostrongylus vitrinus isolates from southwest Iran

Haplotype (170 bp) SNPs Sample ID SNPs Genotype and GenBank ID (321 bp)
Haplotype A 85T > C T1; T2; T3; T4; T17; T18; T28 147T > C Genotype 1 (MK271667)
T9; T24; T35 37C > A; 147T > C Genotype 2 (MK271664)
T6; T16 62C > T; 147T > C Genotype 3 (MK271663)
T7; T21 37C > A; 62C > T; 147T > C Genotype 4 (MK271666)
T15; T20 51T > C; 147T > C Genotype 5 (MK271674)
Haplotype B   T8; T25; T29; T31   Genotype 6 (MK271662)
T10; T14; T19; T23 51T > C Genotype 7 (MK271665)
T13 47_48insT; 51T > C Genotype 8 (MK271673)
T5 37C > A Genotype 9 (MK271669)
Haplotype C 34T > A; 85T > C T26; T33; T34 62C > T; 96T > A; 147T > C Genotype 10 (MK271675)
T11 47_48insT; 51T > C; 96T > A; 147T > C Genotype 11 (MK271672)
T27 51T > C; 96T > A; 147T > C Genotype 12 (MK271676)
T32 96T > A; 147T > C Genotype 13 (MK271677)
T12 37C > A; 96T > A; 147T > C; 246T > C Genotype 14 (MK271670)
T30 37C > A; 62C > T; 96T > A; 147T > C Genotype 15 (MK271668)
Haplotype D 34T > A; 85T > C; 147A > G T22 37C > A; 62C > T; 96T > A; 147T > C; 209A > G; 246T > C Genotype 16 (MK271671)