Table 2 Characteristics of E. shiquicus isolates
Sample number | Sample ID | Infected organ or tissue | Location of collection | Haplotype | Sequence distance from H1 (%) | References |
|---|---|---|---|---|---|---|
1 | ref. isolate | Lung | Sichuan | H1 | – | Yuan et al. [9] |
2 | D.P113 | Lung | Damxung | H2 | 99.6 | This study |
3 | D.P149 | Lung | Damxung | H2 | 99.6 | This study |
4 | D.P151 | Chest cavity | Damxung | H2 | 99.6 | This study |
5 | D.P2 | Lung | Damxung | H2 | 99.6 | This study |
6 | D.P26 | Abdomen | Damxung | H3 | 99.8 | This study |
7 | D.P41 | Chest | Damxung | H4 | 99.7 | This study |
8 | N.P12 | Lung | Nyêmo | H5 | 99.7 | This study |
9 | N.P124 | Lung | Nyêmo | H6 | 99.1 | This study |
10 | N.P15 | Lung | Nyêmo | H4 | 99.7 | This study |
11 | N.P43 | Lung | Nyêmo | H2 | 99.6 | This study |
12 | N.P62 | Lung | Nyêmo | H7 | 99.1 | This study |
13 | N.P64 | Lung | Nyêmo | H6 | 99.1 | This study |
14 | N.P72 | Lung | Nyêmo | H6 | 99.1 | This study |
15 | N.P83 | Lung | Nyêmo | H6 | 99.1 | This study |
16 | N.P89 | Lung | Nyêmo | H6 | 99.1 | This study |
17 | P10 | Lung | Darlag | H8 | 99.9 | Cai et al. [18] |
18 | P23 | Lung | Darlag | H9 | 99.5 | Cai et al. [18] |
19 | P27 | Lung | Darlag | H6 | 99.1 | Cai et al. [18] |
20 | P28 | Lung | Darlag | H10 | 99.6 | Cai et al. [18] |
21 | P29 | Lung | Darlag | H8 | 99.9 | Cai et al. [18] |
22 | P31 | Lung | Darlag | H9 | 99.5 | Cai et al. [18] |
23 | P32 | Lung | Darlag | H6 | 99.1 | Cai et al. [18] |
24 | P34 | Lung | Darlag | H9 | 99.5 | Cai et al. [18] |
25 | P45 | kidney | Darlag | H6 | 99.1 | Cai et al. [18] |
26 | P49 | Lung | Darlag | H11 | 99.8 | Cai et al. [18] |
27 | P50 | Lung | Darlag | H9 | 99.5 | Cai et al. [18] |
28 | P52L | Lung | Darlag | H6 | 99.1 | Cai et al. [18] |
29 | P52S | Spleen | Darlag | H6 | 99.1 | Cai et al. [18] |
30 | P53 | Lung | Darlag | H12 | 99.6 | Cai et al. [18] |
31 | P54 | Lung | Darlag | H12 | 99.6 | Cai et al. [18] |
32 | P55 | Lung | Darlag | H9 | 99.5 | Cai et al. [18] |
33 | P6 | Lung | Darlag | H9 | 99.5 | Cai et al. [18] |
34 | P7 | Lung | Darlag | H9 | 99.5 | Cai et al. [18] |
35 | P70 | Lung | Darlag | H8 | 99.9 | Cai et al. [18] |
36 | P77 | Lung | Darlag | H11 | 99.8 | Cai et al. [18] |