Table 3 Diversity of piroplasmas detected in wildlife and cattle samples collected from the Kafue ecosystem
Genus | Species | Genotypes | BLAST top hit | ID | OTU | ASV | % Identity |
|---|---|---|---|---|---|---|---|
Theileria | T. velifera | T. velifera | T. velifera KSA_D_Th6 | LC431550 | 1 | 1 | 100.00 |
7 | 99.78 | ||||||
64 | 99.78 | ||||||
92 | 99.78 | ||||||
T. velifera A | Theileria cf. velifera A | GU733375 | 2 | 6 | 98.69 | ||
T. velifera B | Theileria cf. velifera (Syncerus caffer) clone H4a | JN572701 | 1 | 29 | 100.00 | ||
55 | 99.78 | ||||||
T. mutans | T. mutans | Theileria mutans isolate MT15 | KU206320 | 11 | 3 | 100.00 | |
16 | 99.78 | ||||||
T. mutans MSD | Theileria sp. B15a | JN572700 | 12 | 5 | 100.00 | ||
T. mutans-like 1 | Theileria cf. mutans 1 (Syncerus caffer) clone C21b | JN572699 | 13 | 26 | 99.56 | ||
T. mutans-like 2 | Theileria cf. mutans 2 (Syncerus caffer) clone Q15d | JN572696 | 14 | 42 | 98.68 | ||
60 | 98.46 | ||||||
T. parva | Â | Theileria parva isolate F45P16 | MH929322 | 23 | 15 | 100.00 | |
Theileria parva | AF013418 | 23 | 86 | 99.78 | |||
101 | 99.56 | ||||||
Theileria sp. (buffalo) | Theileria sp. ex Syncerus caffer MCO-2011 clone V8b | HQ895982 | 23 | 10 | 100.00 | ||
11 | 99.78 | ||||||
18 | 99.56 | ||||||
22 | 99.56 | ||||||
Theileria sp. (bougasvlei) | Â | Theileria sp. KS-2015 isolate CAT79 | KP410267 | 22 | 25 | 100.00 | |
T. taurotragi | Â | Theileria taurotragi | L19082 | 20 | 35 | 97.80 | |
21 | 46 | 99.78 | |||||
62 | 100.00 | ||||||
Theileria sp. (sable) | Â | Theileria sp. BM-2010/sable | GU733378 | 16 | 8 | 99.78 | |
14 | 99.57 | ||||||
85 | 99.35 | ||||||
Theileria sp. (waterbuck) | Â | Theileria sp. NG-2013c isolate waterbuck 39 clone 6 | KF597072 | 19 | 4 | 99.35 | |
Theileria sp. (tsessebe) | Â | Theileria sp. ex Damaliscus lunatus clone TS22_11 | HQ179766 | 16 | 9 | 99.57 | |
23 | 99.78 | ||||||
49 | 100.00 | ||||||
Theileria sp. (giraffe) | Â | Theileria sp. NG-2012b isolate 44 clone 2 | JQ928925 | 15 | 2* | 95.90 | |
106* | 95.66 | ||||||
47* | 95.71 | ||||||
Theileria sp. (bongo) | Â | Uncultured Theileria sp. isolate BNG13 | MH569462 | 17 | 12 | 97.82 | |
Uncultured Theileria sp. isolate BNG10 | MH569463 | 18 | 13 | 99.57 | |||
Babesia | B. bigemina | Â | Babesia bigemina clone PR28CL7 | MH050387 | 7 | 32 | 100.00 |
71 | 99.77 | ||||||
Babesia bigemina isolate B_bi11 | EF458200 | 7 | 67 | 100.00 | |||
Babesia bigemina clone PR38CL1BBIG | MH047819 | 7 | 19 | 100.00 | |||
Babesia sp. | Â | Babesia sp. 9 1093 cl1 | KX218437 | 10 | 58 | 98.95 | |
B. occultans | Â | Babesia occultans isolate Trender1 | KP745626 | 6 | 28 | 100.00 | |
Hepatozoon | H. canis | Â | Hepatozoon canis isolate 70 | MK645969 | 8 | 40 | 99.60 |
Hepatozoon sp. | Â | Hepatozoon sp. 2 BCS-2013 isolate L4 | KF270665 | 9 | 82 | 99.00 | |
Colpodellidae | Â | Â | Uncultured Colpodellidae clone PL31 | MN103986 | 3 | 57 | 100.00 |