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Table 1. Identification of Dermanyssus gallinae core RNA interference pathway genes

From: RNAi gene knockdown in the poultry red mite, Dermanyssus gallinae (De Geer 1778), a tool for functional genomics

Gene name (gene symbol)

Tetranychus urticae accession

D. gallinae ortholog/s gene accession

(Gene #); top BLAST E-value

Dicer (Dcr)

tetur19g00520; tetur07g00990

DEGAL4207g00210; DEGAL2576g00010

(2); 0

Partner of Drosha (Pasha)

tetur36g00220; tetur36g00250

DEGAL6243g00040

(1); 1.00E–105

Drosha (Drosha)

tetur12g00910

DEGAL3563g00160

(1); 0.0

Loquacious (loqs)

tetur13g00430; tetur13g00410

DEGAL6165g00020e; DEGAL6165g00030e

(2); 5.00E–20

Argonaute (AGO)

tetur20g02910; tetur09g00620; tetur09g03140; tetur02g10560; tetur02g10580; tetur04g01190; tetur02g10570

DEGAL5747g00010; DEGAL5147g00020c; DEGAL2433g00050; EGAL1807g00010; DEGAL5891g00010; DEGAL2763g00020; DEGAL2329g00030; DEGAL3376g00010; DEGAL1832g00030; DEGAL3253g00060b; DEGAL3253g00070b; DEGAL5243g00010; DEGAL3253g00080b; DEGAL3253g00100b; DEGAL867g00020g; DEGAL5130g00010;

DEGAL4347g00070; DEGAL1695g00010a; DEGAL1695g00020a; DEGAL4104g00020; DEGAL867g00010g; DEGAL6462g00020f;

DEGAL6462g00010f; DEGAL2892g00010; DEGAL5147g00040c

(25); 0

P-element induced wimpy testis (Piwi); Aubergine (aub); Argonaute-3 (AGO3)

tetur06g03300; tetur28g00450; tetur28g00340; tetur06g05580; tetur06g05570; tetur06g05600; tetur17g03380

N/A

(0); N/A

Exportin-5 (Exportin-5)

tetur02g00520; tetur02g00500

DEGAL4407g00370

(1); 3.00E–28

RNA-directed RNA polymerase

(RdRP)

tetur02g08750; tetur02g08780; tetur02g08810; tetur02g08820

DEGAL1833g00010; DEGAL2592g00050; DEGAL4182g00030; EGAL2262g00020;

DEGAL6675g00010; DEGAL6621g00090; DEGAL6161g00150d; GAL3284g00080; DEGAL6161g00170d

(9); 1.00E–95

  1. BLAST, Basic local alignment search tool; N/A, not available
  2. a–gEach identified D. gallinae gene is an orthologue of T. urticae RNAi pathway genes based on best reciprocal BLAST hit. Genes located on the same D. gallinae scaffold are highlighted using the superscript letters a-g.