TY - JOUR AU - Rim, H. J. PY - 2005 DA - 2005// TI - Clonorchiasis: an update JO - J Helminthol. VL - 79 UR - https://doi.org/10.1079/JOH2005300 DO - 10.1079/JOH2005300 ID - Rim2005 ER - TY - JOUR AU - Furst, T. AU - Keiser, J. AU - Utzinger, J. PY - 2012 DA - 2012// TI - Global burden of human food-borne trematodiasis: a systematic review and meta-analysis JO - Lancet Infect Dis. VL - 12 UR - https://doi.org/10.1016/S1473-3099(11)70294-8 DO - 10.1016/S1473-3099(11)70294-8 ID - Furst2012 ER - TY - JOUR AU - Wang, K. X. AU - Zhang, R. B. AU - Cui, Y. B. AU - Tian, Y. AU - Cai, R. AU - Li, C. P. PY - 2004 DA - 2004// TI - Clinical and epidemiological features of patients with clonorchiasis JO - World J Gastroenterol. VL - 10 UR - https://doi.org/10.3748/wjg.v10.i3.446 DO - 10.3748/wjg.v10.i3.446 ID - Wang2004 ER - TY - JOUR AU - Yu, S. H. AU - Kawanaka, M. AU - Li, X. M. AU - Xu, L. Q. AU - Lan, C. G. AU - Rui, L. PY - 2003 DA - 2003// TI - Epidemiological investigation on Clonorchis sinensis in human population in an area of South China JO - Jpn J Infect Dis. VL - 56 ID - Yu2003 ER - TY - JOUR AU - Kim, T. S. AU - Pak, J. H. AU - Kim, J. B. AU - Bahk, Y. Y. PY - 2016 DA - 2016// TI - Clonorchis sinensis, an oriental liver fluke, as a human biological agent of cholangiocarcinoma: a brief review JO - BMB Rep. VL - 49 UR - https://doi.org/10.5483/BMBRep.2016.49.11.109 DO - 10.5483/BMBRep.2016.49.11.109 ID - Kim2016 ER - TY - JOUR AU - Bouvard, V. AU - Baan, R. AU - Straif, K. AU - Grosse, Y. AU - Secretan, B. AU - Ghissassi, F. PY - 2009 DA - 2009// TI - A review of human carcinogens—part B: biological agents JO - Lancet Oncol. VL - 10 UR - https://doi.org/10.1016/S1470-2045(09)70096-8 DO - 10.1016/S1470-2045(09)70096-8 ID - Bouvard2009 ER - TY - JOUR AU - Lee, H. J. AU - Lee, C. S. AU - Kim, B. S. AU - Joo, K. H. AU - Lee, J. S. AU - Kim, T. S. PY - 2002 DA - 2002// TI - Purification and characterization of a 7-kDa protein from Clonorchis sinensis adult worms JO - J Parasitol. VL - 88 UR - https://doi.org/10.1645/0022-3395(2002)088[0499:PACOAK]2.0.CO;2 DO - 10.1645/0022-3395(2002)088[0499:PACOAK]2.0.CO;2 ID - Lee2002 ER - TY - JOUR AU - Zhao, Q. P. AU - Moon, S. U. AU - Lee, H. W. AU - Na, B. K. AU - Cho, S. Y. AU - Kong, Y. PY - 2004 DA - 2004// TI - Evaluation of Clonorchis sinensis recombinant 7-kilodalton antigen for serodiagnosis of clonorchiasis JO - Clin Diagn Lab Immunol. VL - 11 ID - Zhao2004 ER - TY - JOUR AU - Martínez-Sernández, V. AU - Mezo, M. AU - González-Warleta, M. AU - Perteguer, M. J. AU - Gárate, T. AU - Romarís, F. PY - 2017 DA - 2017// TI - Delineating distinct heme-scavenging and-binding functions of domains in MF6p/helminth defense molecule (HDM) proteins from parasitic flatworms JO - J Biol Chem. VL - 292 UR - https://doi.org/10.1074/jbc.M116.771675 DO - 10.1074/jbc.M116.771675 ID - Martínez-Sernández2017 ER - TY - JOUR AU - Robinson, M. W. AU - Donnelly, S. AU - Hutchinson, A. T. AU - To, J. AU - Taylor, N. L. AU - Norton, R. S. PY - 2011 DA - 2011// TI - A family of helminth molecules that modulate Innate cell responses via molecular mimicry of host antimicrobial peptides JO - PLoS Pathog. VL - 7 UR - https://doi.org/10.1371/journal.ppat.1002042 DO - 10.1371/journal.ppat.1002042 ID - Robinson2011 ER - TY - JOUR AU - Robinson, M. W. AU - Alvarado, R. AU - To, J. AU - Hutchinson, A. T. AU - Dowdell, S. N. AU - Lund, M. PY - 2012 DA - 2012// TI - A helminth cathelicidin-like protein suppresses antigen processing and presentation in macrophages via inhibition of lysosomal vATPase JO - FASEB J. VL - 26 UR - https://doi.org/10.1096/fj.12-213876 DO - 10.1096/fj.12-213876 ID - Robinson2012 ER - TY - JOUR AU - Alvarado, R. AU - O’Brien, B. AU - Tanaka, A. AU - Dalton, J. P. AU - Donnelly, S. PY - 2015 DA - 2015// TI - A parasitic helminth-derived peptide that targets the macrophage lysosome is a novel therapeutic option for autoimmune disease JO - Immunobiology. VL - 220 UR - https://doi.org/10.1016/j.imbio.2014.11.008 DO - 10.1016/j.imbio.2014.11.008 ID - Alvarado2015 ER - TY - JOUR AU - Martínez-Sernández, V. AU - Perteguer, M. J. AU - Mezo, M. AU - González-Warleta, M. AU - Gárate, T. AU - Valero, M. A. PY - 2017 DA - 2017// TI - Fasciola spp.: mapping of the MF6 epitope and antigenic analysis of the MF6p/HDM family of heme-binding proteins JO - PLoS One. VL - 12 UR - https://doi.org/10.1371/journal.pone.0188520 DO - 10.1371/journal.pone.0188520 ID - Martínez-Sernández2017 ER - TY - JOUR AU - Martínez-Sernández, V. AU - Mezo, M. AU - González-Warleta, M. AU - Perteguer, M. J. AU - Muiño, L. AU - Guitián, E. PY - 2014 DA - 2014// TI - The MF6p/FhHDM-1 major antigen secreted by the trematode parasite Fasciola hepatica is a heme-binding protein JO - J Biol Chem. VL - 289 UR - https://doi.org/10.1074/jbc.M113.499517 DO - 10.1074/jbc.M113.499517 ID - Martínez-Sernández2014 ER - TY - JOUR AU - Toh, S. Q. AU - Glanfield, A. AU - Gobert, G. N. AU - Jones, M. K. PY - 2010 DA - 2010// TI - Heme and blood-feeding parasites: friends or foes? JO - Parasit Vectors. VL - 3 UR - https://doi.org/10.1186/1756-3305-3-108 DO - 10.1186/1756-3305-3-108 ID - Toh2010 ER - TY - JOUR AU - Kang, J. M. AU - Lee, J. AU - Ju, H. L. AU - Ju, J. W. AU - Kim, J. H. AU - Pak, J. H. PY - 2015 DA - 2015// TI - Characterization of a gut-associated asparaginyl endopeptidase of Clonorchis sinensis JO - Exp Parasitol. VL - 153 UR - https://doi.org/10.1016/j.exppara.2015.03.015 DO - 10.1016/j.exppara.2015.03.015 ID - Kang2015 ER - TY - JOUR AU - Schneider, C. A. AU - Rasband, W. S. AU - Eliceiri, K. W. PY - 2012 DA - 2012// TI - NIH Image to ImageJ: 25 years of image analysis JO - Nat Methods. VL - 9 UR - https://doi.org/10.1038/nmeth.2089 DO - 10.1038/nmeth.2089 ID - Schneider2012 ER - TY - JOUR AU - Jenuth, J. P. PY - 2000 DA - 2000// TI - The NCBI. Publicly available tools and resources on the Web JO - Methods Mol Biol. VL - 132 ID - Jenuth2000 ER - TY - JOUR AU - Petersen, T. N. AU - Brunak, S. AU - Heijne, G. AU - Nielsen, H. PY - 2011 DA - 2011// TI - SignalP 4.0: discriminating signal peptides from transmembrane regions JO - Nat Methods. VL - 8 UR - https://doi.org/10.1038/nmeth.1701 DO - 10.1038/nmeth.1701 ID - Petersen2011 ER - TY - JOUR AU - Katoh, K. AU - Standley, D. M. PY - 2013 DA - 2013// TI - MAFFT multiple sequence alignment software version 7: improvements in performance and usability JO - Mol Biol Evol. VL - 30 UR - https://doi.org/10.1093/molbev/mst010 DO - 10.1093/molbev/mst010 ID - Katoh2013 ER - TY - JOUR AU - Waterhouse, A. M. AU - Procter, J. B. AU - Martin, D. M. AU - Clamp, M. AU - Barton, G. J. PY - 2009 DA - 2009// TI - Jalview Version 2-a multiple sequence alignment editor and analysis workbench JO - Bioinformatics. VL - 25 UR - https://doi.org/10.1093/bioinformatics/btp033 DO - 10.1093/bioinformatics/btp033 ID - Waterhouse2009 ER - TY - JOUR AU - Yang, J. AU - Zhang, Y. PY - 2015 DA - 2015// TI - I-TASSER server: new development for protein structure and function predictions JO - Nucleic Acids Res. VL - 43 UR - https://doi.org/10.1093/nar/gkv342 DO - 10.1093/nar/gkv342 ID - Yang2015 ER - TY - JOUR AU - Holm, L. AU - Kaariainen, S. AU - Rosenstrom, P. AU - Schenkel, A. PY - 2008 DA - 2008// TI - Searching protein structure databases with DaliLite vol 3 JO - Bioinformatics. VL - 24 UR - https://doi.org/10.1093/bioinformatics/btn507 DO - 10.1093/bioinformatics/btn507 ID - Holm2008 ER - TY - JOUR AU - Holm, L. AU - Laakso, L. M. PY - 2016 DA - 2016// TI - Dali server update JO - Nucleic Acids Res. VL - 44 UR - https://doi.org/10.1093/nar/gkw357 DO - 10.1093/nar/gkw357 ID - Holm2016 ER - TY - JOUR AU - Heo, L. AU - Park, H. AU - Seok, C. PY - 2013 DA - 2013// TI - GalaxyRefine: protein structure refinement driven by side-chain repacking JO - Nucleic Acids Res. VL - 41 UR - https://doi.org/10.1093/nar/gkt458 DO - 10.1093/nar/gkt458 ID - Heo2013 ER - TY - JOUR AU - Lovell, S. C. AU - Davis, I. W. AU - Arendall, W. B. AU - Bakker, P. I. AU - Word, J. M. AU - Prisant, M. G. PY - 2003 DA - 2003// TI - Structure validation by Calpha geometry: phi, psi and Cbeta deviation JO - Proteins. VL - 50 UR - https://doi.org/10.1002/prot.10286 DO - 10.1002/prot.10286 ID - Lovell2003 ER - TY - JOUR AU - Colovos, C. AU - Yeates, T. O. PY - 1993 DA - 1993// TI - Verification of protein structures: patterns of nonbonded atomic interactions JO - Protein Sci. VL - 2 UR - https://doi.org/10.1002/pro.5560020916 DO - 10.1002/pro.5560020916 ID - Colovos1993 ER - TY - JOUR AU - Wiederstein, M. AU - Sippl, M. J. PY - 2007 DA - 2007// TI - ProSA-web: interactive web service for the recognition of errors in three-dimensional structures of proteins JO - Nucleic Acids Res. VL - 35 UR - https://doi.org/10.1093/nar/gkm290 DO - 10.1093/nar/gkm290 ID - Wiederstein2007 ER - TY - JOUR AU - He, Z. AU - Zhang, H. AU - Gao, S. AU - Lercher, M. J. AU - Chen, W. H. AU - Hu, S. PY - 2016 DA - 2016// TI - Evolview v2: an online visualization and management tool for customized and annotated phylogenetic trees JO - Nucleic Acids Res. VL - 44 UR - https://doi.org/10.1093/nar/gkw370 DO - 10.1093/nar/gkw370 ID - He2016 ER - TY - JOUR AU - Zhang, Y. AU - Skolnick, J. PY - 2005 DA - 2005// TI - TM-align: a protein structure alignment algorithm based on the TM-score JO - Nucleic Acids Res. VL - 33 UR - https://doi.org/10.1093/nar/gki524 DO - 10.1093/nar/gki524 ID - Zhang2005 ER - TY - JOUR AU - Lee, J. AU - Kim, S. H. PY - 2009 DA - 2009// TI - PDB editor: a user-friendly Java-based protein data bank file editor with a GUI JO - Acta Crystallogr D Biol Crystallogr. VL - 65 UR - https://doi.org/10.1107/S090744490900451X DO - 10.1107/S090744490900451X ID - Lee2009 ER - TY - JOUR AU - Kim, S. AU - Thiessen, P. A. AU - Bolton, E. E. AU - Chen, J. AU - Fu, G. AU - Gindulyte, A. PY - 2016 DA - 2016// TI - PubChem substance and compound databases JO - Nucleic Acids Res. VL - 44 UR - https://doi.org/10.1093/nar/gkv951 DO - 10.1093/nar/gkv951 ID - Kim2016 ER - TY - JOUR AU - OʼBoyle, N. M. AU - Banck, M. AU - James, C. A. AU - Morley, C. AU - Vandermeersch, T. AU - Hutchison, G. R. PY - 2011 DA - 2011// TI - Open Babel: an open chemical toolbox JO - J Cheminform. VL - 3 UR - https://doi.org/10.1186/1758-2946-3-33 DO - 10.1186/1758-2946-3-33 ID - OʼBoyle2011 ER - TY - JOUR AU - Trott, O. AU - Olson, A. J. PY - 2010 DA - 2010// TI - AutoDock Vina: improving the speed and accuracy of docking with a new scoring function, efficient optimization, and multithreading JO - J Comput Chem. VL - 31 ID - Trott2010 ER - TY - JOUR AU - Bikadi, Z. AU - Hazai, E. PY - 2009 DA - 2009// TI - Application of the PM6 semi-empirical method to modeling proteins enhances docking accuracy of AutoDock JO - J Cheminform. VL - 1 UR - https://doi.org/10.1186/1758-2946-1-15 DO - 10.1186/1758-2946-1-15 ID - Bikadi2009 ER - TY - JOUR AU - Alvarado, R. AU - To, J. AU - Lund, M. E. AU - Pinar, A. AU - Mansell, A. AU - Robinson, M. W. PY - 2017 DA - 2017// TI - The immune modulatory peptide FhHDM-1 secreted by the helminth Fasciola hepatica prevents NLRP3 inflammasome activation by inhibiting endolysosomal acidification in macrophages JO - FASEB J. VL - 31 UR - https://doi.org/10.1096/fj.201500093R DO - 10.1096/fj.201500093R ID - Alvarado2017 ER - TY - JOUR AU - Thivierge, K. AU - Cotton, S. AU - Schaefer, D. A. AU - Riggs, M. W. AU - To, J. AU - Lund, M. E. PY - 2013 DA - 2013// TI - Cathelicidin-like helminth defence molecules (HDMs): absence of cytotoxic, anti-microbial and anti-protozoan activities imply a specific adaptation to immune modulation JO - PLoS Negl Trop Dis. VL - 7 UR - https://doi.org/10.1371/journal.pntd.0002307 DO - 10.1371/journal.pntd.0002307 ID - Thivierge2013 ER - TY - JOUR AU - Martinez-Sernandez, V. AU - Orbegozo-Medina, R. A. AU - Romaris, F. AU - Paniagua, E. AU - Ubeira, F. M. PY - 2016 DA - 2016// TI - Usefulness of ELISA methods for assessing LPS interactions with proteins and peptides JO - PLoS One. VL - 11 UR - https://doi.org/10.1371/journal.pone.0156530 DO - 10.1371/journal.pone.0156530 ID - Martinez-Sernandez2016 ER - TY - JOUR AU - Kim, Y. J. AU - Yoo, W. G. AU - Lee, M. R. AU - Kang, J. M. AU - Na, B. K. AU - Cho, S. H. PY - 2017 DA - 2017// TI - Molecular and structural characterization of the tegumental 20.6-kDa protein in Clonorchis sinensis as a potential druggable target JO - Int J Mol Sci. VL - 18 UR - https://doi.org/10.3390/ijms18030557 DO - 10.3390/ijms18030557 ID - Kim2017 ER - TY - JOUR AU - Lu, Y. AU - Yoo, W. G. AU - Dai, F. AU - Lee, J. Y. AU - Pak, J. H. AU - Sohn, W. M. PY - 2018 DA - 2018// TI - Characterization of a novel organic solute transporter homologue from Clonorchis sinensis JO - PLoS Negl Trop Dis. VL - 12 UR - https://doi.org/10.1371/journal.pntd.0006459 DO - 10.1371/journal.pntd.0006459 ID - Lu2018 ER - TY - JOUR AU - Xu, D. AU - Zhang, Y. PY - 2013 DA - 2013// TI - Toward optimal fragment generations for ab initio protein structure assembly JO - Proteins. VL - 81 UR - https://doi.org/10.1002/prot.24179 DO - 10.1002/prot.24179 ID - Xu2013 ER - TY - JOUR AU - Nam, J. H. AU - Moon, J. H. AU - Kim, I. K. AU - Lee, M. R. AU - Hong, S. J. AU - Ahn, J. H. PY - 2012 DA - 2012// TI - Free radicals enzymatically triggered by Clonorchis sinensis excretory-secretory products cause NF-kappaB-mediated inflammation in human cholangiocarcinoma cells JO - Int J Parasitol. VL - 42 UR - https://doi.org/10.1016/j.ijpara.2011.11.001 DO - 10.1016/j.ijpara.2011.11.001 ID - Nam2012 ER - TY - JOUR AU - Pak, J. H. AU - Son, W. C. AU - Seo, S. B. AU - Hong, S. J. AU - Sohn, W. M. AU - Na, B. K. PY - 2016 DA - 2016// TI - Peroxiredoxin 6 expression is inversely correlated with nuclear factor-kappaB activation during Clonorchis sinensis infestation JO - Free Radic Biol Med. VL - 99 UR - https://doi.org/10.1016/j.freeradbiomed.2016.08.016 DO - 10.1016/j.freeradbiomed.2016.08.016 ID - Pak2016 ER - TY - JOUR AU - Yan, C. AU - Wang, Y. H. AU - Yu, Q. AU - Cheng, X. D. AU - Zhang, B. B. AU - Li, B. PY - 2015 DA - 2015// TI - Clonorchis sinensis excretory/secretory products promote the secretion of TNF-alpha in the mouse intrahepatic biliary epithelial cells via Toll-like receptor 4 JO - Parasit Vectors. VL - 8 UR - https://doi.org/10.1186/s13071-015-1171-0 DO - 10.1186/s13071-015-1171-0 ID - Yan2015 ER - TY - JOUR AU - Kim, E. M. AU - Kwak, Y. S. AU - Yi, M. H. AU - Kim, J. Y. AU - Sohn, W. M. AU - Yong, T. S. PY - 2017 DA - 2017// TI - Clonorchis sinensis antigens alter hepatic macrophage polarization in vitro and in vivo JO - PLoS Negl Trop Dis. VL - 11 UR - https://doi.org/10.1371/journal.pntd.0005614 DO - 10.1371/journal.pntd.0005614 ID - Kim2017 ER -