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Table 2 Most common and the longest microsatellites of the motifs

From: Development of genome-wide polymorphic microsatellite markers for Trichinella spiralis

Repeat

Mononucleotide

Dinucleotide

Trinucleotide

Tetranucleotide

Pentanucleotide

Hexanucleotide

Motif

%

Motif

%

Motif

%

Motif

%

Motif

%

Motif

%

Common

A/T

59.43

AT/AT

61.84

AAT/ATT

39.28

AAAT/ATTT

37.30

AAAAT/ATTTT

18.07

AAAAAT/ATTTTT

10.87

 

C/G

40.57

AC/GT

24.53

AAC/GTT

22.21

AAAC/GTTT

15.27

AAATT/AATTT

10.53

AAAATT/AATTTT

6.67

   

AG/CT

13.38

AAG/CTT

10.06

AATT/AATT

7.95

AATAT/ATATT

9.72

AAAAAG/CTTTTT

5.19

   

CG/CG

0.24

ATC/ATG

9.46

AATG/ATTC

6.13

AAAAC/GTTTT

7.97

AAAATG/ATTTTC

4.31

     

AGC/CTG

6.58

ACAT/ATGT

4.93

AATAC/ATTGT

7.22

AAATTT/AAATTT

3.52

     

Other

12.40

Other

28.42

Other

46.49

Other

69.45

Longest

(G)184

(TG)54

(ATA)64

(CATA)17

(TATAA)98

(AATAGT)9

(TGTATA)9

(TATATG)9

(ATATAC)9