Fig. 3

Whole genome alignments with predicted structural variants. The hybrid assembly contigs are shown as coloured boxes next to the reference Giardia AWB chromosome to which they align (black lines with vertical names beside each). Translucent purple boxes above the contigs show the locations and sizes of predicted structural variants in all three hybrid genomes. An interactive version of this figure with filtering capabilities can be found at: https://github.com/StephenMJPollo/Giardia_Nanopore