Fig. 1

Results of the sequence alignment of the sample sequencing data with the selected reference genome. Diaphragms were collected at 1 (d–1), 3 (d–3), 7 (d–7), 10 (d–10), 15 (d–15) days post-infection (dpi); uninfected diaphragms were also collected (d–0). There was no statistical difference in the percentage of mapped reads at different time points between the uninfected and infected diaphragms