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Table 2 Sequencing data statistics

From: Time-resolved transcriptional profiling of Trichinella-infected murine myocytes helps to elucidate host–pathogen interactions in the muscle stage

Samples

Clean readsa

Clean basesb

GC contentc (%)

% ≥ Q30d

d-0-1

29,306,627

8,723,905,770

49.41

93.33

d-0-2

29,701,695

8,856,713,318

49.12

93.23

d-0-3

24,573,915

7,325,026,546

49.13

93.51

d-1-1

42,774,938

12,743,577,440

49.50

95.06

d-1-2

47,356,896

14,119,786,038

49.09

94.64

d-1-3

47,632,923

14,229,261,830

49.12

94.83

d-3-1

41,692,065

12,459,755,692

49.22

94.96

d-3-2

44,962,040

13,435,712,256

49.19

95.19

d-3-3

41,808,804

12,496,583,212

49.03

95.04

d-7-1

52,403,887

15,659,838,448

48.70

94.91

d-7-2

44,892,431

13,419,760,674

49.43

94.82

d-7-3

43,566,080

13,011,606,674

48.79

94.77

d-10-1

46,072,970

13,783,739,164

49.41

94.85

d-10-2

53,341,148

15,929,948,426

49.46

94.83

d-10-3

50,069,261

14,950,813,380

49.36

94.67

d-15-1

47,120,191

14,081,050,788

49.71

94.60

d-15-2

41,755,099

12,464,431,734

48.94

94.73

d-15-3

42,645,130

12,738,561,562

49.23

94.92

  1. aPaired-end reads of clean data
  2. bTotal number of bases of clean data
  3. cGC content percentage of clean data, i.e. percentage of clean data for bases G and C
  4. dPercentage of bases with a Q-score of ≥ 30