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Table 3 Alignment results of each sample

From: Time-resolved transcriptional profiling of Trichinella-infected murine myocytes helps to elucidate host–pathogen interactions in the muscle stage

Samples Total readsa Mapped readsb Uniq. mapped readsc Multiple map. readsd Reads map to ‘+’e Reads map to ‘–’f
d-0-1 58,613,254 56,475,681 (96.35%) 50,859,528 (86.77%) 5,616,153 (9.58%) 25,981,307 (44.33%) 26,076,507 (44.49%)
d-0-2 59,403,390 57,299,237 (96.46%) 51,049,269 (85.94%) 6,249,968 (10.52%) 26,071,598 (43.89%) 26,139,723 (44.00%)
d-0-3 49,147,830 47,414,092 (96.47%) 42,500,765 (86.48%) 4,913,327 (10.00%) 21,732,380 (44.22%) 21,786,530 (44.33%)
d-1-1 85,549,876 82,325,825 (96.23%) 74,360,476 (86.92%) 7,965,349 (9.31%) 38,336,236 (44.81%) 38,490,739 (44.99%)
d-1-2 94,713,792 91,639,498 (96.75%) 81,994,693 (86.57%) 9,644,805 (10.18%) 42,254,746 (44.61%) 42,390,965 (44.76%)
d-1-3 95,265,846 92,379,516 (96.97%) 81,663,964 (85.72%) 10,715,552 (11.25%) 42,047,639 (44.14%) 42,154,318 (44.25%)
d-3-1 83,384,130 80,785,406 (96.88%) 71,651,204 (85.93%) 9,134,202 (10.95%) 36,970,139 (44.34%) 37,058,529 (44.44%)
d-3-2 89,924,080 87,153,989 (96.92%) 77,696,003 (86.40%) 9,457,986 (10.52%) 39,952,614 (44.43%) 40,064,092 (44.55%)
d-3-3 83,617,608 81,334,162 (97.27%) 71,806,277 (85.87%) 9,527,885 (11.39%) 36,949,431 (44.19%) 37,014,840 (44.27%)
d-7-1 104,807,774 101,706,283 (97.04%) 89,439,347 (85.34%) 12,266,936 (11.70%) 46,119,278 (44.00%) 46,223,712 (44.10%)
d-7-2 89,784,862 86,469,953 (96.31%) 78,051,494 (86.93%) 8,418,459 (9.38%) 40,087,913 (44.65%) 40,143,735 (44.71%)
d-7-3 87,132,160 84,256,540 (96.70%) 74,469,393 (85.47%) 9,787,147 (11.23%) 38,286,864 (43.94%) 38,382,981 (44.05%)
d-10-1 92,145,940 89,221,639 (96.83%) 81,900,144 (88.88%) 7,321,495 (7.95%) 42,120,068 (45.71%) 42,160,622 (45.75%)
d-10-2 106,682,296 102,682,416 (96.25%) 92,480,400 (86.69%) 10,202,016 (9.56%) 47,660,016 (44.67%) 47,779,175 (44.79%)
d-10-3 100,138,522 96,653,596 (96.52%) 87,175,782 (87.06%) 9,477,814 (9.46%) 44,725,983 (44.66%) 44,860,821 (44.80%)
d-15-1 94,240,382 90,680,881 (96.22%) 80,900,655 (85.84%) 9,780,226 (10.38%) 41,755,839 (44.31%) 41,819,200 (44.38%)
d-15-2 83,510,198 79,354,215 (95.02%) 70,468,299 (84.38%) 8,885,916 (10.64%) 36,144,364 (43.28%) 36,222,735 (43.38%)
d-15-3 85,290,260 81,572,791 (95.64%) 73,292,073 (85.93%) 8,280,718 (9.71%) 37,623,305 (44.11%) 37,700,361 (44.20%)
  1. aNumber of reads of clean data, not paired-end reads
  2. bNumber of reads mapped to the reference genome and the percentage in clean reads
  3. cNumber of reads mapped uniquely (Uniq.) to the reference genome and the percentage in clean reads
  4. dNumber of reads multiply mapped (map.) to the reference genome and the percentage in clean reads
  5. eNumber of reads mapped to the sense chain and the percentage in clean reads
  6. fNumber of reads mapped to the anti-sense chain and the percentage in clean reads