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Table 3 Alignment results of each sample

From: Time-resolved transcriptional profiling of Trichinella-infected murine myocytes helps to elucidate host–pathogen interactions in the muscle stage

Samples

Total readsa

Mapped readsb

Uniq. mapped readsc

Multiple map. readsd

Reads map to ‘+’e

Reads map to ‘–’f

d-0-1

58,613,254

56,475,681 (96.35%)

50,859,528 (86.77%)

5,616,153 (9.58%)

25,981,307 (44.33%)

26,076,507 (44.49%)

d-0-2

59,403,390

57,299,237 (96.46%)

51,049,269 (85.94%)

6,249,968 (10.52%)

26,071,598 (43.89%)

26,139,723 (44.00%)

d-0-3

49,147,830

47,414,092 (96.47%)

42,500,765 (86.48%)

4,913,327 (10.00%)

21,732,380 (44.22%)

21,786,530 (44.33%)

d-1-1

85,549,876

82,325,825 (96.23%)

74,360,476 (86.92%)

7,965,349 (9.31%)

38,336,236 (44.81%)

38,490,739 (44.99%)

d-1-2

94,713,792

91,639,498 (96.75%)

81,994,693 (86.57%)

9,644,805 (10.18%)

42,254,746 (44.61%)

42,390,965 (44.76%)

d-1-3

95,265,846

92,379,516 (96.97%)

81,663,964 (85.72%)

10,715,552 (11.25%)

42,047,639 (44.14%)

42,154,318 (44.25%)

d-3-1

83,384,130

80,785,406 (96.88%)

71,651,204 (85.93%)

9,134,202 (10.95%)

36,970,139 (44.34%)

37,058,529 (44.44%)

d-3-2

89,924,080

87,153,989 (96.92%)

77,696,003 (86.40%)

9,457,986 (10.52%)

39,952,614 (44.43%)

40,064,092 (44.55%)

d-3-3

83,617,608

81,334,162 (97.27%)

71,806,277 (85.87%)

9,527,885 (11.39%)

36,949,431 (44.19%)

37,014,840 (44.27%)

d-7-1

104,807,774

101,706,283 (97.04%)

89,439,347 (85.34%)

12,266,936 (11.70%)

46,119,278 (44.00%)

46,223,712 (44.10%)

d-7-2

89,784,862

86,469,953 (96.31%)

78,051,494 (86.93%)

8,418,459 (9.38%)

40,087,913 (44.65%)

40,143,735 (44.71%)

d-7-3

87,132,160

84,256,540 (96.70%)

74,469,393 (85.47%)

9,787,147 (11.23%)

38,286,864 (43.94%)

38,382,981 (44.05%)

d-10-1

92,145,940

89,221,639 (96.83%)

81,900,144 (88.88%)

7,321,495 (7.95%)

42,120,068 (45.71%)

42,160,622 (45.75%)

d-10-2

106,682,296

102,682,416 (96.25%)

92,480,400 (86.69%)

10,202,016 (9.56%)

47,660,016 (44.67%)

47,779,175 (44.79%)

d-10-3

100,138,522

96,653,596 (96.52%)

87,175,782 (87.06%)

9,477,814 (9.46%)

44,725,983 (44.66%)

44,860,821 (44.80%)

d-15-1

94,240,382

90,680,881 (96.22%)

80,900,655 (85.84%)

9,780,226 (10.38%)

41,755,839 (44.31%)

41,819,200 (44.38%)

d-15-2

83,510,198

79,354,215 (95.02%)

70,468,299 (84.38%)

8,885,916 (10.64%)

36,144,364 (43.28%)

36,222,735 (43.38%)

d-15-3

85,290,260

81,572,791 (95.64%)

73,292,073 (85.93%)

8,280,718 (9.71%)

37,623,305 (44.11%)

37,700,361 (44.20%)

  1. aNumber of reads of clean data, not paired-end reads
  2. bNumber of reads mapped to the reference genome and the percentage in clean reads
  3. cNumber of reads mapped uniquely (Uniq.) to the reference genome and the percentage in clean reads
  4. dNumber of reads multiply mapped (map.) to the reference genome and the percentage in clean reads
  5. eNumber of reads mapped to the sense chain and the percentage in clean reads
  6. fNumber of reads mapped to the anti-sense chain and the percentage in clean reads