|
Transcriptome assembly statistics
|
|
Total transcriptome size
|
130,120,686
|
93,400,441
|
118,099,223
|
123,061,068
|
|
Number of transcripts
|
106,223
|
75,491
|
93,846
|
103,041
|
|
Longest transcript (bp)
|
17,265
|
17,479
|
26,653
|
26,653
|
|
Shortest transcript (bp)
|
100
|
100
|
100
|
100
|
|
% Transcripts > 1 kb
|
41.32%
|
40.83%
|
41.52%
|
39.97%
|
|
Mean transcript size (bp)
|
1224
|
1237
|
1258
|
1194
|
|
Median transcript size (bp)
|
815
|
797
|
817
|
780
|
|
N50 transcript length (bp)
|
1875
|
1979
|
1978
|
1884
|
|
L50 transcript count
|
19,869
|
13,592
|
16,813
|
18,414
|
|
Transcriptome annotation statistics
|
|
Transcript clusters
| | | |
97,343
|
|
Transcripts > 1 RPKM
| | | |
28,061
|
|
Full ORF > 240 bp
| | | |
22,007
|
|
Annotated in at least one database
| | | |
18,961 (86.0%)
|
|
Assigned with EC numbers
| | | |
3608 (16.4%)
|
|
Assigned with GO terms
| | | |
9249 (42.0%)
|
|
Assigned to KEGG pathways
| | | |
3725 (16.9%)
|
|
Assigned with PFAM identifiers
| | | |
6619 (30.0%)
|
|
Assigned with InterPro identifiers
| | | |
9116 (41.7%)
|
|
Number of non-redundant predicted proteins
| | |
9355
|
