Table 1 O. erraticus salivary gland transcriptome assembly and annotation statistics
Summary | 0 days | 7 days | 14 days | Merged |
|---|---|---|---|---|
Transcriptome assembly statistics | ||||
Total transcriptome size | 130,120,686 | 93,400,441 | 118,099,223 | 123,061,068 |
Number of transcripts | 106,223 | 75,491 | 93,846 | 103,041 |
Longest transcript (bp) | 17,265 | 17,479 | 26,653 | 26,653 |
Shortest transcript (bp) | 100 | 100 | 100 | 100 |
% Transcripts > 1 kb | 41.32% | 40.83% | 41.52% | 39.97% |
Mean transcript size (bp) | 1224 | 1237 | 1258 | 1194 |
Median transcript size (bp) | 815 | 797 | 817 | 780 |
N50 transcript length (bp) | 1875 | 1979 | 1978 | 1884 |
L50 transcript count | 19,869 | 13,592 | 16,813 | 18,414 |
Transcriptome annotation statistics | ||||
Transcript clusters | 97,343 | |||
Transcripts > 1 RPKM | 28,061 | |||
Full ORF > 240 bp | 22,007 | |||
Annotated in at least one database | 18,961 (86.0%) | |||
Assigned with EC numbers | 3608 (16.4%) | |||
Assigned with GO terms | 9249 (42.0%) | |||
Assigned to KEGG pathways | 3725 (16.9%) | |||
Assigned with PFAM identifiers | 6619 (30.0%) | |||
Assigned with InterPro identifiers | 9116 (41.7%) | |||
Number of non-redundant predicted proteins | 9355 | |||