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Table 1 O. erraticus salivary gland transcriptome assembly and annotation statistics

From: RNA-seq analysis and gene expression dynamics in the salivary glands of the argasid tick Ornithodoros erraticus along the trophogonic cycle

Summary 0 days 7 days 14 days Merged
Transcriptome assembly statistics
 Total transcriptome size 130,120,686 93,400,441 118,099,223 123,061,068
 Number of transcripts 106,223 75,491 93,846 103,041
 Longest transcript (bp) 17,265 17,479 26,653 26,653
 Shortest transcript (bp) 100 100 100 100
 % Transcripts > 1 kb 41.32% 40.83% 41.52% 39.97%
 Mean transcript size (bp) 1224 1237 1258 1194
 Median transcript size (bp) 815 797 817 780
 N50 transcript length (bp) 1875 1979 1978 1884
 L50 transcript count 19,869 13,592 16,813 18,414
Transcriptome annotation statistics
 Transcript clusters     97,343
 Transcripts > 1 RPKM     28,061
 Full ORF > 240 bp     22,007
 Annotated in at least one database     18,961 (86.0%)
 Assigned with EC numbers     3608 (16.4%)
 Assigned with GO terms     9249 (42.0%)
 Assigned to KEGG pathways     3725 (16.9%)
 Assigned with PFAM identifiers     6619 (30.0%)
 Assigned with InterPro identifiers     9116 (41.7%)
 Number of non-redundant predicted proteins    9355
  1. Samples were taken from female ticks before feeding (0 days) and 7 and 14 days after feeding
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