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Table 1 Analysis of genetic markers (individually and concatenated) using sequences generated in this study compared with the sequences available in GenBank

From: Genetic diversity and population structure of Rhipicephalus sanguineus sensu lato across different regions of Colombia

 

12S rDNA

COI

ITS2

Concatenated M

Colombia

GenBank

Colombia

GenBank

Colombia

GenBank

Colombia

Number of sequences

170

221

181

251

235

291

166

S

4

56

18

108

15

70

22

Eta

4

71

18

132

16

79

22

h

4

29

14

49

34

69

18

Hd

0.318

0.557

0.676

0.804

0.850

0.892

0.742

 Var Hd

0.00188

0.00155

0.00058

0.00034

0.00026

0.00015

0.00052

 sd Hd

0.043

0.039

0.024

0.018

0.016

0.0012

0.023

Pi

0.00154

0.02259

0.00429

0.03551

0.00393

0.00508

0.00336

Theta of eta

0.00213

0.03646

0.00672

0.04663

0.00289

0.01383

0.00488

Theta of S

0.00213

0.02876

0.00672

0.03815

0.00270

0.01226

0.00488

 Var (no recombination)

0.0000013

0.0000505

0.0000045

0.0000744

0.0000008

0.000081

0.0000022

 sd (no recombination)

0.00114

0.00710

0.00212

0.00862

0.00088

0.00285

0.00148

 Var (recombination)

0.0000011

0.0000148

0.0000025

0.0000135

0.0000005

0.0000021

0.0000011

 sd (recombination)

0.00106

0.00384

0.00158

0.00367

0.00070

0.00146

0.00104

Tajima's D

−0.50354

−1.14841

−0.96082

−0.62811

0.91559

−1.88183

−0.86051

Fu and Li's D*

−0.37596

−1.08061

−2.661119*

−1.24546

−0.80379

−5.56384**

−2.37026*

Fu and Li's F*

−0.49469

−1.33475

−2.36679*

−1.12848

−0.16609

−4.57960**

−2.13043

  1. The total number of mutations (Eta), polymorphic sites (S), haplotypes (h), haplotype diversity (Hd), nucleotide diversity (pi) expressed as nucleotide differences per site between two sequences, the Theta index of the Eta by site (θ) and the theta index of the S were reported with the corresponding variations and standard deviations
  2. *P < 0.05; ** P < 0.01