From: Molecular detection of a novel Ancylostoma sp. by whole mtDNA sequence from pangolin Manis javanica
Region | Gene/region | Length of gene regions (bp)/nucleotide identity (%) | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Ancylostoma sp. (MZ665481.1) | Ancylostomatinae | Bunostominae | |||||||||||||
Ancylostoma caninum | Ancylostoma ceylanicum | Ancylostoma duodenale | Ancylostoma tubaeforme | Uncinaria sanguinis | Nector americanus | Bunostomum phlebotomum | Bunostomum trigonocephalum | ||||||||
AP017673.1 | FJ483518.1 | KY640299.1 | AP017674.1 | AJ417718.1 | KY070315.1 | KF924756.1 | KF924757.1 | AJ417719.2 | MW067147.1 | FJ483517.1 | JQ234674.1 | KF255998.1 | |||
Length (bp) | |||||||||||||||
PCGs | cox1 | 1578 | 1578/87.6 | 1578/87.5 | 1578/87.9 | 1578/87.7 | 1577/87.9 | 1578/87.9 | 1578/86.1 | 1578/86.7 | 1575/86.6 | 1573/86.6 | 1573/87.0 | 1573/84.0 | 1576/84.3 |
cox1 | 696 | 696/88.6 | 696/88.7 | 696/85.8 | 696/86.0 | 696/87.7 | 696/88.2 | 696/84.3 | 696/84.9 | 696/83.9 | 696/83.9 | 696/83.9 | 696/43.0 | 696/77.0 | |
nad3 | 336 | 336/85.1 | 336/85.1 | 336/84.7 | 336/84.5 | 336/86.0 | 336/88.3 | 336/82.7 | 336/80.0 | 336/83.0 | 336/80.9 | 336/81.2 | 336/51.6 | 336/63.5 | |
nad5 | 1576 | 1582/85.3 | 1576/85.4 | 1579/85.5 | 1582/85.8 | 1579/84.6 | 1576/84.9 | 1582/81.0 | 1582/81.6 | 1582/81.8 | 1582/80.0 | 1582/79.7 | 1582/78.9 | 1582/78.9 | |
nad6 | 435 | 432/83.1 | 435/83.6 | 435/83.3 | 435/81.8 | 435/80.0 | 435/82.9 | 435/78.1 | 435/76.5 | 435/79.0 | 435/76.7 | 435/76.7 | 435/60.9 | 435/41.9 | |
nad4L | 234 | 234/89.7 | 234/91.0 | 234/92.8 | 234/91.8 | 234/91.8 | 234/90.6 | 234/86.3 | 234/86.3 | 234/88.8 | 234/88.4 | 234/88.4 | 234/78.1 | 234/47.3 | |
nad1 | 873 | 873/86.9 | 873/85.4 | 873/85.5 | 873/85.4 | 873/86.0 | 873/86.8 | 873/83.6 | 873/84.4 | 873/82.3 | 876/80.3 | 876/78.5 | 873/44.0 | 873/78.5 | |
atp6 | 600 | 600/89.1 | 600/88.8 | 599/89.8 | 602/89.6 | 599/90.1 | 600/88.6 | 600/82.0 | 600/83.6 | 598/84.6 | 600/83.8 | 600/84.1 | 600/57.6 | 600/75.6 | |
nad2 | 846 | 846/83.1 | 846/83.1 | 846/83.8 | 846/83.4 | 846/83.1 | 846/82.2 | 846/78.4 | 846/77.9 | 846/79.5 | 849/76.7 | 849/76.1 | 849/70.1 | 849/62.9 | |
cob | 1113 | 1113/88.1 | 1113/88.1 | 1113/87.0 | 1113/86.8 | 1112/88.2 | 1113/87.9 | 1113/82.2 | 1113/81.6 | 1113/83.1 | 1113/83.9 | 1113/83.5 | 1113/78.2 | 1113/75.8 | |
cox3 | 766 | 766/89.3 | 766/89.3 | 766/87.7 | 766/87.9 | 766/88.5 | 766/87.7 | 766/86.0 | 766/84.4 | 766/86.6 | 766/85.9 | 766/86.5 | 766/81.0 | 766/81.2 | |
nad4 | 1230 | 1230/86.9 | 1230/86.2 | 1230/86.5 | 1230/86.7 | 1230/85.7 | 1230/87.4 | 1230/83.0 | 1230/81.8 | 1230/82.6 | 1230/80.4 | 1230/80.6 | 1230/78 | 1230/72.0 | |
rRNA | rrnL | 967 | 958/88.3 | 963/87.8 | 960/89.0 | 960/88.4 | 958/87.3 | 958/89.6 | 957/86.2 | 958/85.4 | 958/80.1 | 961/82.7 | 961/82.6 | 961/76.8 | 961/69.7 |
rrnS | 698 | 695/92.9 | 694/93.0 | 694/94.0 | 694/93.9 | 697/91.8 | 697/93.1 | 699/87.7 | 697/88.2 | 699/86.6 | 694/86.1 | 694/86.1 | 693/84.5 | 696/64.5 | |
NCR | SNCR | 100 | 88/null | 87/42.1 | 61/null | 66/null | 79/null | 88/57.1 | 81/41.6 | 82/null | 67/null | 24/65.0 | 21/null | 2/null | 2/null |
LNCR | 106 | 100/70.7 | 100/68.6 | 103/70.5 | 94/52.3 | 109/78.2 | 107/73.0 | 86/73.2 | 86/73.2 | 73/null | 108/58.3 | 106/43.9 | 100/48.1 | 106/42.8 | |
 AT-rich |  | 261 | 262/76.4 | 272/80.8 | 244/80.3 | 246/78.3 | 268/74.5 | 286/76.8 | 333/73.2 | 331/74.9 | 173/null | 235/50.6 | 234/52.3 | 219/56.0 | 218/60.0 |
CmtG | Â | 13,757 | 13,702 | 13,717 | 13,660 | 13,655 | 13,721 | 13,730 | 13,74 | 13,75 | 13,605 | 13,799 | 13,790 | 13,764 | 13,771 |
TI (%) | Â | 87.3 | 87.2 | 86.8 | 86.9 | 86.8 | 87.1 | 83.5 | 83.2 | 83.7 | 80.9 | 80.8 | 82.7 | 82.7 |