Methodology | Phylum | Nucleic acid of choice | Host | Platform | Matrix | Gene/marker or reference loci | References |
---|---|---|---|---|---|---|---|
NA | Nematoda | DNA | NA | NA | In silico | 12S, 16S, ITS-2 | [110] |
Metabarcoding | Nematoda | DNA | Rat | MiSeq Illumina | Faeces | 18S (V4-V5, V7-V8, V9) | [86] |
Metabarcoding | Nematoda | DNA | Rat | MiSeq Illumina | Faeces | 28S (D3-D4, D4-D5, D3-D5, D4-D6) | [86] |
Metabarcoding | Platyhelminthes | DNA | Rat | MiSeq Illumina | Faeces | 18S (V4-V5, V7-V8, V9) | [86] |
Metabarcoding | Platyhelminthes | DNA | Rat | MiSeq Illumina | Faeces | 28S (D3-D4, D4-D5, D3-D5, D4-D6) | [86] |
Metabarcoding | Platyhelminthes | DNA | Various | NA | Environmental | 18S (V4, V7,V8-V9, V9) | [87] |
Metabarcoding | Nematoda | DNA | Rat | MiSeq Illumina | Worms | 18S | [88] |
Metabarcoding | Cestoda | DNA | Rat | MiSeq Illumina | Worms | 18S | [88] |
Metabarcoding | Nematoda | DNA | Cattle | MiSeq Illumina | Larvae/faeces | ITS-2 | [97] |
Metabarcoding | Nematoda | DNA | Sheep | MiSeq Illumina | Larvae | ITS-2 | [98] |
Metabarcoding | Nematoda | DNA | Cattle | MiSeq Illumina | Larvae | ITS-2 | [99] |
Metabarcoding | Nematoda | DNA | Sheep | MiSeq Illumina | Eggs and larvae | ITS-2 | [100] |
Metabarcoding | Nematoda | DNA | Rufus mouse lemur | 454 Roche | Larvae | 18S | [107] |
Metabarcoding | Nematoda | DNA | Wild reindeer | MiSeq Illumina | Larvae | ITS-2 | [111] |
Metabarcoding | Nematoda | DNA | Sheep | MiSeq Illumina | Larvae | ITS-2; see also [97] | [116] |
Metabarcoding | Nematoda | DNA | Roe deer | MiSeq Illumina | Larvae | ITS-2; see also [97] | [113] |
Metabarcoding | Nematoda | DNA | Wild ruminants | MiSeq Illumina | Larvae | ITS-2; see also [97] | [112] |
Metabarcoding | Nematoda | DNA | Bison | MiSeq Illumina | Larvae | ITS-2; see also [97] | [108] |
Metabarcoding | Nematoda | DNA | Horse | MiSeq Illumina | Larvae | ITS-2; see also [97] | [109] |
Metabarcoding | Nematoda | DNA | Gorillas, Mangabey | MiSeq Illumina | Larvae | ITS-2 | [114] |
Metagenomics | Nematoda | DNA | Primate | Hiseq Illumina | Faeces | 18S, COI | [105] |
Metagenomics | Nematoda, Platyhelminthes | DNA | Human | MiSeq Illumina | Faeces | Unavailable | [106] |