Hosta | Positive no./examined no. (%) | Assemblage (n) | Sub-assemblage (n)/accession no. | MLGs (n) | ||
---|---|---|---|---|---|---|
SSU rRNA | bg | tpic | gdh | |||
Cattle (Bos taurus) | 47/138 (34.06) | D (1) | D (1)/OM001828 | Â | D1 (1)/OM001863 | Â |
E (46) | E1 (1)/OM001829 | E1Â (1)/OM001847 | E1 (1)/OM001865 | MLG-E1 (1) | ||
 | B2 (1), E1 (4), E4 (1)/OM001850, E6 (1), AI-1/E1 (1) |  |  | |||
E2 (1)/OM001830 | E2 (1)/OM001848 | Â | Â | |||
E3 (1)/OM001831 | E3 (1)/OM001849 | E1 (1) | MLG-E2 (1) | |||
E2 (1), E4 (1)/OM001832, E5 (1)/OM001833 | Â | Â | Â | |||
 | E5 (1)/OM001851 | E2 (1)/OM001866 |  | |||
 | E1 (1) | E3 (1)/OM001867 |  | |||
E2 (2) | E1 (2) | E1 (2) | MLG-E3 (2) | |||
E2 (1) | E1 (1) | E3 (1) | MLG-E4 (1) | |||
E1 (1) | E6 (1)/OM001852 | E4 (1)/OM001868 | MLG-E5 (1) | |||
E3 (1) | E1 (1) | Â | Â | |||
 | E7 (1)/OM001853 | E3 (1) |  | |||
E3 (1) | E1 (1) | E1 (1) | MLG-E6 (1) | |||
E6 (1)/OM001834 | E1 (1) | E3 (1) | MLG-E7 (1) | |||
E7 (1)/OM001835 | E1 (1) | E3 (1) | MLG-E8 (1) | |||
Sheep (Ovis aries) | 63/117 (53.85) | A (2) | Â | Â | AI (1)/OM001856 | Â |
AI (1)/OM001822 | AI-1 (1)/OM001840 | AI (1) | MLG-AI (1) | |||
E (61) | Â | E6 (1) | Â | Â | ||
E8 (1)/OM001836 | E7 (1) | E5 (1)/OM001869 | MLG-E9 (1) | |||
E8 (3) | E1 (3) | E6 (3)/OM001870 | MLG-E10 (3) | |||
E3 (1) | E6 (1) | E7 (1)/OM001871 | MLG-E11 (1) | |||
E9 (1)/OM001837 | E1 (1) | E4 (1) | MLG-E12 (1) | |||
E8 (1) | E6 (1) | E7 (1) | MLG-E13 (1) | |||
E3 (1) | E1 (1) | E6 (1) | MLG-E14 (1) | |||
 |  | E8 (1)/OM001872, E9 (1), E10 (1)/OM001874, E11 (1)/OM001875, E13 (1), E14 (1)/OM001878 |  | |||
E3 (2) | E6 (2) | Â | Â | |||
E8 (1) | E1 (1) | Â | Â | |||
E8 (1) | E7 (1) | Â | Â | |||
 | E6 (1) | E7 (1) |  | |||
E8 (1) | E8 (1)/OM001854 | E6 (1) | MLG-E15 (1) | |||
E3 (1) | E1 (1) | Â | Â | |||
E10 (1)/OM001838 | E8 (1) | E3 (1) | MLG-E16 (1) | |||
E3 (2) | E1 (2) | E12 (2)/OM001876 | MLG-E17 (2) | |||
E10 (1) | Â | E3 (1) | Â | |||
 | E8 (1), E9 (1)/OM001855 |  |  | |||
 | E8 (1) | E3 (1) |  | |||
E3 (1) | E8 (1) | Â | Â | |||
E8 (1) | E1 (1) | E4 (1) | MLG-E18 (1) | |||
E8 (1) | Â | E13 (1)/OM001877 | Â | |||
E8 (1) | E1 (1) | E13 (1) | MLG-E19 (1) | |||
E8 (1) | E2 (1) | E9 (1)/OM001873 | MLG-E20 (1) | |||
E2 (1) | E6 (1) | E4 (1) | MLG-E21 (1) | |||
E3 (1) | E1 (1) | E3 (1) | MLG-E22 (1) | |||
AI (1) | AI-1/E6 (1) | AI (1) | Â | |||
E8 (1) | AI-1 (1) | Â | Â | |||
E8 (1) | E6 (1) | E4 (1) | MLG-E23 (1) | |||
E3 (1) | Â | E4 (1) | Â | |||
Pigs (Sus scrofa domesticus) | 1/59 (1.69) | E (1) | Â | Â | Â | Â |
Reindeer (Rangifer tarandus) | 9/124 (7.26) | A (7) | AI (1) | Â | Â | Â |
 | AI-2 (2)/OM001841 |  |  | |||
E (2) | Â | Â | Â | Â | ||
Red deer (Cervus elaphus) | 7/83 (8.43) | A (1), E (6) | Â | Â | Â | Â |
Sika deer (Cervus nippon) | 5/63 (7.94) | E (5) | Â | AI-1 (1) | Â | Â |
Dogs (Canis lupus familiaris) | 4/105 (3.81) | C (4) | Â | Â | D2 (1)/OM001864 | Â |
Cats (Felis catus) | 1/17 (5.88) | F (1) | Â | Â | Â | Â |
Raccoon dogs (Nyctereutes procyonoides) | 1/16 (6.25) | C (1) | Â | Â | Â | Â |
Rabbits (Oryctolagus cuniculus) | 67/212 (31.60) | B (67) | B2 (3)/OM001825 | Â | Â | Â |
 | B2 (6)/OM001844 |  |  | |||
 | B2 (3) | B3 (3)/OM001860 |  | |||
 | B2 (2) | B4 (2)/OM001861 |  | |||
B2 (1) | Â | B3 (1) | Â | |||
B2 (3) | B2 (3) | B4 (3) | MLG-B2 (3) | |||
B2 (7) | B2 (7) | B3 (7) | MLG-B3 (7) | |||
B2 (2) | B3 (2)/OM001845 | B3 (2) | MLG-B4 (2) | |||
B3 (1)/OM001826 | B3 (1) | B4 (1) | MLG-B5 (1) | |||
B2 (3) | B3 (3) | B4 (3) | MLG-B6 (3) | |||
B2 (1) | B4 (1)/OM001846 | B3 (1) | MLG-B7 (1) | |||
B2 (1) | B2 (1) | Â | Â | |||
B2 (1) | B3 (1) | Â | Â | |||
B4 (1)/OM001827 | B2 (1) | B4 (1) | MLG-B8 (1) | |||
B2 (1) | Â | B5 (1)/OM001862 | Â | |||
Brown rats (Rattus norvegicus) | 9/191 (4.71) | G (9) | G (1)/OM001839 | Â | Â | Â |
G (1) | Â | G (1)/OM001879 | Â | |||
 |  | G (2) |  | |||
Total | 214/1326b (16.14) | A (10), B (67), C (5), D (1), E (121), F (1), G (9) | AI (3), B2–B4 (25), D (1), E1–E10 (42), G (2) | AI (5), B2–B4 (32), E1–E9 (49), AI + E1/E6 (2) | AI (3), B3–B5 (25), D1 (1), D2 (1), E1–E14 (41), G (3) |  |