Table 4 Sequencing results based on the recG gene in tick and small mammal samples that did not yield multilocus sequence typing products
From: Diversity of Borrelia burgdorferi sensu lato in ticks and small mammals from different habitats
Sample | Borrelia genospecies | Most similar sequence | ||||
|---|---|---|---|---|---|---|
Sample identifier (ID) | Host species | Collection site | Habitat | Identity (%) | GenBank ID | |
HT1 | Ixodes ricinus | UH18 | Grassland | Borrelia spielmanii | 100 | AB526160 |
HT7 | I. ricinus | UH18 | Grassland | Borrelia valaisiana | 100 | CP009117 |
HT15 | I. ricinus | UH18 | Grassland | Borrelia afzelii | 99.7 | CP000395 |
HT20 | I. ricinus | UH18 | Forest | B. spielmanii | 99 | AB526160 |
HT32 | I. ricinus | UH16 | Forest | B. afzelii | 100 | JX971362 |
HT38 | I. ricinus | UH16 | Forest | B. afzelii | 99.9 | CP009058 |
HT68 | I. ricinus | Kyf2 | Forest | B. valaisiana | 99.9 | CP009117 |
HT81 | I. ricinus | E3 | Grassland | B. afzelii | 100 | JX971362 |
HT99 | I. ricinus | E3 | Grassland | Borrelia garinii | 99.1 | JF331209 |
HT115 | I. ricinus | E3 | Forest | B. valaisiana | 100 | CP009117 |
HT126 | I. ricinus | E1 | Grassland | Borrelia lusitaniae | 100 | MH747538 |
HT192 | I. ricinus | E1 | Forest | B. garinii | 100 | JF331209 |
HT199 | I. ricinus | E1 | Forest | B. afzelii | 99.9 | JX971362 |
HT217 | I. ricinus | E1 | Forest | B. lusitaniae | 99.7 | MH747538 |
HT261 | I. ricinus | UH7 | Grassland | Borrelia burgdorferi s.s. | 98.6 | JF419041 |
HT298 | I. ricinus | UH9 | Grassland | B. afzelii | 97.1 | JX971362 |
HT303 | I. ricinus | UH9 | Grassland | B. garinii | 100 | JF331209 |
HT307 | I. ricinus | UH9 | Grassland | B. garinii | 100 | AB555923 |
HT310 | I. ricinus | UH9 | Grassland | B. afzelii | 97.1 | JX971362 |
HT324 | I. ricinus | UH9 | Forest | B. valaisiana | 99.7 | CP009117 |
HT331 | I. ricinus | UH9 | Forest | B. afzelii | 100 | JX971362 |
HT332 | I. ricinus | UH9 | Forest | B. afzelii | 99.9 | CP002933 |
HT375 | I. ricinus | UH1 | Grassland | B. valaisiana | 99.3 | MG972813 |
KS18/1496 | Sorex araneus | UH12 | Grassland | B. afzelii | 100 | MG972813 |
KS19/1709 | Microtus arvalis | UH16 | Grassland | B. garinii | 100 | CP028861 |
KS19/2049 | M. arvalis | UH1 | Grassland | B. afzelii | 100 | CP018262 |