From: Mitochondrial phylogenomics provides insights into the taxonomy and phylogeny of fleas
Gene/region | Positions | Strand | Size (bp) | Number of aaa | Ini/Ter codonsb | Anticodon | Intergenic nucleotides | |||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Pi | Cc | Pi | Cc | Pi | Cc | Pi | Cc | Pi | Cc | Pi | Cc | Pi | Cc | |
tRNA-Ile (I) | 3235–3297 | 841–904 | H | H | 63 | 64 | GAT | GAT | 0 | |||||
tRNA-Gln (Q) | 3406–3338 | 970–902 | L | L | 69 | 69 | TTG | TTG | 40 | − 3 | ||||
tRNA-Met (M) | 3472–3539 | 1009–1076 | H | H | 68 | 68 | CAT | CAT | 65 | 38 | ||||
nad2 | 3540–4539 | 1081–2078 | H | H | 1000 | 998 | 333 | 332 | ATT/T | ATG/TA | 0 | 4 | ||
tRNA-Trp (W) | 4540–4604 | 2019–2143 | H | H | 65 | 65 | TCA | TCA | 0 | 0 | ||||
tRNA-Cys (C) | 4657–4598 | 2196–2136 | L | L | 60 | 61 | GCA | GCA | − 7 | − 8 | ||||
tRNA-Tyr (Y) | 4721–4658 | 2261–2198 | L | L | 64 | 64 | GTA | GTA | 0 | 1 | ||||
cox1 | 4755–6256 | 2274–3796 | H | H | 1502 | 1523 | 500 | 507 | ATT/TA | TTT/TA | 33 | 12 | ||
tRNA-LeuUUR (L2) | 6257–6321 | 3797–3860 | H | H | 65 | 64 | TAA | TAA | 0 | 0 | ||||
cox2 | 6322–7002 | 3861–4539 | H | H | 681 | 679 | 226 | 226 | ATG/TAA | ATG/T | 0 | 0 | ||
tRNA-Lys (K) | 7005–7075 | 4540–4610 | H | H | 71 | 71 | CTT | CTT | 2 | 0 | ||||
tRNA-Asp (D) | 7075–7139 | 4610–4673 | H | H | 65 | 64 | GTC | GTC | − 1 | − 1 | ||||
atp8 | 7140–7301 | 4674–4838 | H | H | 162 | 165 | 53 | 54 | ATT/TAA | TTG/TAA | 0 | 0 | ||
atp6 | 7289–7969 | 4826–5503 | H | H | 681 | 678 | 226 | 225 | TTG/TAA | TTG/TAA | − 13 | − 13 | ||
cox3 | 7969–8751 | 5503–6285 | H | H | 783 | 783 | 260 | 260 | ATG/TAA | ATG/TAA | − 1 | − 1 | ||
tRNA-Gly (G) | 8752–8814 | 6286–6347 | H | H | 63 | 62 | TCC | TCC | 0 | 0 | ||||
nad3 | 8815–9163 | 6348–6696 | H | H | 349 | 349 | 116 | 116 | ATC/T | ATT/T | 0 | 0 | ||
tRNA-Ala (A) | 9164–9227 | 6697–6760 | H | H | 64 | 64 | TGC | TGC | 0 | 0 | ||||
tRNA-Arg (R) | 9228–9289 | 6761–6819 | H | H | 62 | 59 | TCG | TCG | 0 | 0 | ||||
tRNA-Asn (N) | 9291–9355 | 6821–6885 | H | H | 65 | 65 | GTT | GTT | 1 | 1 | ||||
tRNA-SerAGN (S1) | 9355–9423 | 6884–6943 | H | H | 69 | 60 | TCT | TCT | − 1 | − 2 | ||||
tRNA-Glu (E) | 9422–9489 | 6944–7006 | H | H | 68 | 63 | TTC | TTC | − 2 | 0 | ||||
tRNA-Phe (F) | 9552–9487 | 7070–7007 | L | L | 66 | 64 | GAA | GAA | − 3 | 0 | ||||
nad5 | 11,269–9562 | 8781–7071 | L | L | 1708 | 1711 | 569 | 570 | ATG/T | ATT/T | 9 | 0 | ||
tRNA-His (H) | 11,333–11,271 | 8843–8782 | L | L | 63 | 62 | GTG | GTG | 1 | 0 | ||||
nad4 | 12,660–11,334 | 10,179–8844 | L | L | 1327 | 1336 | 442 | 445 | ATG/T | ATG/T | 0 | 0 | ||
nad4L | 12,944–12,654 | 10,460–10,173 | L | L | 288 | 288 | 95 | 95 | ATG/TAG | ATG/TAA | − 7 | − 7 | ||
tRNA-Thr (T) | 12,947–13,010 | 10,463–10,525 | H | H | 64 | 63 | TGT | TGT | 2 | 2 | ||||
tRNA-Pro (P) | 13,078–13,010 | 10,590–10,526 | L | L | 69 | 65 | TGG | TGG | − 1 | 0 | ||||
nad6 | 13,080–13,586 | 10,593–11,093 | H | H | 507 | 501 | 168 | 166 | ATT/TAA | ATT/TAA | 1 | 2 | ||
cytb | 13,686–14,717 | 11,093–12,224 | H | H | 1132 | 1132 | 377 | 377 | ATG/T | ATG/T | − 1 | − 1 | ||
tRNA-SerUCN (S2) | 14,718–14,783 | 12,225–12,290 | H | H | 66 | 66 | TGA | TGA | 0 | 0 | ||||
nad1 | 15,747–14,818 | 13,248–12,319 | L | L | 930 | 930 | 309 | 309 | ATT/TAG | ATG/TAA | 34 | 28 | ||
tRNA-LeuCUN (L1) | 15,810–15,748 | 13,312–13,251 | L | L | 63 | 62 | TAG | TAG | 0 | 2 | ||||
rrnL | 17,104–15,811 | 14,612–13,313 | L | L | 1294 | 1300 | 0 | 0 | ||||||
tRNA-Val (V) | 17,171–17,105 | 14,679–14,613 | L | L | 67 | 67 | TAC | TAC | 0 | 0 | ||||
rrnS | 17,964–17,172 | 15,477–14,680 | L | L | 793 | 798 | 0 | 0 | ||||||
AT-loop region | 1–3234;17,965–20,337 | 1–840;15,478–15,609 | 5607 | 972 |