Table 1 kdr haplotypes identified or/and used in this study
Known distribution in Laos and Chinaa | Total | Haplotype code | Polymorphic sites | n | Intron types | GenBank ID |
|---|---|---|---|---|---|---|
LA-LPY | 83 | 1014L1 1014L2 1014L4 1014L7 1014L9 1014L10 1014L11 1014L21b | CTTTGACGCATGCTTCC CTTTGACGCACGCTCTC CTTTGACTCATGCTCTC CTTTGACGCATGCTCCC CTTTGACTCATGCTCCC CTTTGACGCATGCTCTC CTTTGACTCATGCTTCC CTTTGACGCATGCTTTC | 39 2 8 10 6 16 1 1 | H1 H2 H4 H6 H4 H6 H8 H1 | This study |
LA-LXP | 2 | 1014L3 1014L9 | CTTTGACTCACGCTCTC CTTTGACTCATGCTCCC | 1 1 | H3 H4 | This study |
LA-LCP | 4 | 1014L3 | CTTTGACTCACGCTCTC | 4 | H3 | This study |
CN-GX | 22 | 1014L1 1014L2 1014L3 1014L4 1014L5 1014L6 1014L7 1014L8 1014L9 1014L15 1014L16 1014L17 1014L18 1014F1 1014F2 1014S1 1014S2 1014S3 1014S4 1014S5 1014S6 1014C1 | CTTTGACGCATGCTTCC CTTTGACGCACGCTCTC CTTTGACTCACGCTCTC CTTTGACTCATGCTCTC GTTTGACGCACGCTCTC CTTTGTCGCACGCTCTC CTTTGACGCATGCTCCC CTTTGATGCACGCTCTC CTTTGACTCATGCTCCC CTTTGACGCATGATTCC CTTTGACTTACGCTCTC TTTTGACGCATGCTCCT CTTTGACGCACTCTCTC CTTTTACGCATGCTTCC CTTTTACTCACGCTCTC GTTCGACGCACGCTCTC CTTCGACGCACGCTCTC CTTCGACTCACGCTCTC CTTCGACTCATGCTCTC CTTCGACGCATGCTTCC CTTCGTCGCACGCTCTC CTTGTACGCATGCTTCC | 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 | H1 H2 H3 H4 H2 H5 H6 H7 H4 H10 H11 H6 H12 H1 H3 H2 H2 H3 H4 H1 H5 H1 | KY014584.1 KY014585.1 KY014586.1 KY014587.1 KY014588.1 KY014589.1 KY014590.1 KY014591.1 KY014592.1 MH384264.1 MH384265.1 MH384266.1 MH384267.1 KY014598.1 KY014599.1 KY014593.1 KY014594.1 KY014595.1 KY014596.1 MH384262.1 MH384263.1 KY014597.1 |
CN-AH | 10 | 1014L2 1014L14 1014F1 1014F2 1014F4 1014F6 1014F9b 1014C1 1014C2 | CTTTGACGCACGCTCTC CTTTGACGCACGCTTTC CTTTTACGCATGCTTCC CTTTTACTCACGCTCTC CTATTACTCATGCTTCC CTATTACGCATGCTTCC CTTTTACTCATGCTTCC CTTGTACGCATGCTTCC CTTGTACTCATGCTTCC | 1 1 2 1 1 1 1 1 1 | H2 H9 H1 H3 H8 H1 H5 H1 H8 | KF697678.1 KF697679.1 KF697674.1/KF697681.1 KF697677.1 KF697680.1 KF697676.1 KF697682.1 KF697675.1 KF697683.1 |
CN-ZJ | 10 | 1014L1 1014L2 1014L3 1014L4 1014L5 1014F1 1014F6 1014F7b 1014F8b 1014C1 | CTTTGACGCATGCTTCC CTTTGACGCACGCTCTC CTTTGACTCACGCTCTC CTTTGACTCATGCTCTC GTTTGACGCACGCTCTC CTTTTACGCATGCTTCC CTATTACGCATGCTTCC CTTTTACGCACGCTCTC CTTTTACGCATGCATCC CTTGTACGCATGCTTCC | 1 1 1 1 1 1 1 1 1 1 | H1 H2 H3 H4 H2 H1 H1 H2 H14 H1 | MG953793.1 MG953794.1 MG953792.1 MG953790.1 MG953799.1 MG953791.1 MG953798.1 MG953797.1 MG953796.1 MG953795.1 |
CN-YN | 5 | 1014L1 1014L2 1014L3 1014L6 1014L13 | CTTTGACGCATGCTTCC CTTTGACGCACGCTCTC CTTTGACTCACGCTCTC CTTTGTCGCACGCTCTC CTTTGTCGCACGCTCCC | 1 1 1 1 1 | H1 H2 H3 H5 H5 | KF697669.1 KF697670.1 KF697672.1 KF697671.1 KF697673.1 |
CN-HaN | 11 | 1014L1 1014L2 1014L3 1014L4 1014L5 1014L6 1014L8 1014L11 1014L19b 1014L20b 1014F7b | CTTTGACGCATGCTTCC CTTTGACGCACGCTCTC CTTTGACTCACGCTCTC CTTTGACTCATGCTCTC GTTTGACGCACGCTCTC CTTTGTCGCACGCTCTC CTTTGATGCACGCTCTC CTTTGACTCATGCTTCC CTTTGACGCTTGCTTCC CCTTGACGCACGCTCTC CTTTTACGCACGCTCTC | 1 1 1 1 1 1 1 1 1 1 1 | H1 H2 H3 H4 H2 H5 H7 H8 H13 H2 H2 | KF718271.1 KF718272.1 KF718269.1 KF718270.1 KF718274.1 KF718275.1 KF718273.1 KP763787.1 KF718277.1 KF718276.1 KF718278.1 |
CN-HeN | 9 | 1014L1 1014L2 1014L3 1014L6 1014L10 1014F1 1014F5 1014C1 1014W1b | CTTTGACGCATGCTTCC CTTTGACGCACGCTCTC CTTTGACTCACGCTCTC CTTTGTCGCACGCTCTC CTTTGACGCATGCTCTC CTTTTACGCATGCTTCC CTTTCACGCATGCTCCC CTTGTACGCATGCTTCC CTTGGACGCATGCTTCC | 1 1 1 1 1 1 1 1 1 | H1 H2 H3 H5 H6 H1 H6 H1 H1 | KF927164.1 KF927163.1 KF927160.1 KP763803.1 KF927162.1 KF927157.1 KF927156.1 KF927155.1 KF927159.1 |
CN-GZ | 1 | 1014L10 | CTTTGACGCATGCTCTC | 1 | H6 | KP763768.1 |
CN-SC | 1 | 1014L12 | CTTTGACTCACGCTCCC | 1 | H3 | KP763792.1 |
CN-HuB | 1 | 1014F3 | CTTTCACTCACGCTCTC | 1 | H3 | KP763782.1 |