Table 1 Parasite species found in the four hosts and sequencing read counts for the parasites

Chabertia ovina

47878

32

26

44

1

1

56

KF913470.1

Cooperia oncophora

33

1

8

6

AB534601.1

Cooperia sp.

33

1

1

66

1

8

1

AB534601.1

Cylicocyclus ashworthi

140

3

2

6

MW198060.1

Cyathostomum catinatum

990

5

4

12

1

6

16

MT193653.1

Coronocyclus coronatus

957

3

2

264

1

1

9

KY747448.2

Cylicocyclus leptostomus

133

1

1

4

KP693432.1

Cylicocyclus nassatus

3420

8

6

476

1

1

95

3

17

29

MT193649.1

Cylicostephanus longibursatus

1080

5

4

845

1

1

23

MW282937.1, MH483934.1

Cylicostephanus calicatus

233

2

2

137

1

1

41

1

6

14

MW367018.1, MW367002.1

Cylicostephanus goldi

66

2

11

4

KM085357.1

Cylicostephanus minutus

3900

2

2

7

1

6

15

MW282942.1, MH487659.1, MW282946.1

Dictyocaulus sp.

40

2

2

269

2

2

270

2

11

1

KF007339.1

Elaphostrongylus rangiferi

485

1

6

3

AF504027.1

Haemonchus contortus

1728

6

5

2692

2

2

83

3

17

45

LS997564.1

Mazamastrongylus dagestanica

7676

11

9

17

JQ925868.1

Muellerius capillaris

22

1

8

3

AY679527.1

Oesophagostomum dentatum

1357

3

2

200

3

3

93

2

11

17

KU891915.1

Oesophagostomum venulosum

16035

15

12

7896

5

5

4570

3

17

90

1

8

27

HQ283349.1

Ostertagia leptospicularis

132112

102

82

9469

23

22

4442

6

33

665

5

38

173

KC998722.1

Ostertagia ostertagi

30

1

1

2

AB245023.2, AB245008.2

Ostertagia sp.

642

8

6

27630

52

49

2839

4

22

470

3

23

10

KC998722.1

Spiculopteragia asymmetrica

3576

15

12

165245

71

67

13357

9

50

278

1

8

44

AF480617.0, AF480617.1, MT322614.1

Spiculopteragia boehmi

113217

77

62

8459

9

8

2651

4

22

80

AJ577460.1

Spiculopteragia houdemeri

18011

27

25

2021

3

17

816

3

23

46

AB682702.1

Strongylus vulgaris

40

1

6

3

MF489225.1

Teladorsagia circumcincta

2238

1

1

866

5

5

2928

2

11

5271

8

62

36

MZ148615.1

Trichostrongylus axei

53263

48

38

82777

45

42

13476

9

50

43514

12

92

133

KC998725.1

Trichostrongylus colubriformis

3644

2

2

6

JF680985.1

Trichostrongylus sp A

388

2

2

3243

4

4

158

1

6

29

HQ844229.1

Trichostrongylus sp B

61356

62

50

611

4

4

54

2

11

58

KC998731.1

Total

456033

329167

47688

51225

916